Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0238 ATGGTGAATTCGGGAGCTTCCCCTGTCCATAGTTTTGCTTCAGCAGTGGACAATGCGATGGGTAGTATTGGTGGAGATTTGGGAGCATTTCACGTGCATGGTTTTGCTTCGGCAGTGAACAATGCCATGATTAGTACTAGTGGAAGTTTGGGAGCATTGCCTGTGTATGATTTTGCTTCAGCAGTGAACAATGCCATGAGTAGTACTAGTGGAAGTTTGGGAGCATTGCCTGTGTATGGTTTTGCTTCGGCAGTGAACAATGCAATGATTAGTACCAGTGGAAGTTTGGGAGCATTACCCGAGCATGGTTTTGCTTCGGCAGTGAACAATGCCATGAGTAGTACTAGTGGAAGTTTGGGAGCATTACCTGTGCATGGTTTTTCTTCGGCTGTGGACAATGCTATAAGAAGTAGAAGTAGAGCAGATTTGGGAAGATCCAGTTCCCCCGTGCATGGTTTTGCTATGGAAGATGTTTGTGGTTCATTCAGACTGGCAGAGCTTGTAGCAGCAACCAACAATTTCTCGCGTGACAACATGATTAGCCATGGCAGGATTGGCTTTGTGTACAAAGGCAAACTCTTTGATGGTCGTGAGGTGGCTATCAAGAGGGTTGGAACCAGTACTTCAAACATTAAGGAGTTTCAAAGCATTACACTTGGGCCTTTATTCTTGACCAATTGTCTACACCACAAGCACTTGGTTCGGCTTCTAGGGTTGTGTGAAGAGAAAAGTGAAAGGCTCTTGGTGTATCAGTACATGAAGAATAGAGCGTTGTATGATCATTTGCATGACAAGAACAATGTGGAGAAGGGTAGCACTATGTTGAATTCGTGGAAAATGAGGATCAAAATTTCTTTGGACGCTTCCCGTGGAATAGAATATATACATAATCATTTATATTCTATTCACGGAAATATCAAGTCCTCCAACATTCTTCTTGATGCCACTTGGACGGCAAAAGTATCTGATTTTGGGAAGGTATCAGCAGGAACTAGACATGTATTGACAGAAAAGAGTGATGTGTATGGGTTTGGAGTTGTACTGCTAGAGCTTTTAACGGGAAAGAAACCTATACTCAAGAATGAGGAAGATGGAAGCACCCGATTACATGTGATAGACTTTGCAGAGCCTGCTATTTTGGCTGGAGAACTGGTGAAAATTTTGGACCCAAGGGTTGGACCACCCGGTGTGAATGAAGTTGAGGCACTGGAGTTAGTGGCCGATACAGCTATCCATTGTGTGAAAAGGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGTTCAATTTGGAGAGGGCTTTGGCTACTTGTGGTAATGGCCATCGTAGCCCTGAGAAAATAATGGGATTATTGATAGCAATAACCAGATAA 1374 0.436 MVNSGASPVHSFASAVDNAMGSIGGDLGAFHVHGFASAVNNAMISTSGSLGALPVYDFASAVNNAMSSTSGSLGALPVYGFASAVNNAMISTSGSLGALPEHGFASAVNNAMSSTSGSLGALPVHGFSSAVDNAIRSRSRADLGRSSSPVHGFAMEDVCGSFRLAELVAATNNFSRDNMISHGRIGFVYKGKLFDGREVAIKRVGTSTSNIKEFQSITLGPLFLTNCLHHKHLVRLLGLCEEKSERLLVYQYMKNRALYDHLHDKNNVEKGSTMLNSWKMRIKISLDASRGIEYIHNHLYSIHGNIKSSNILLDATWTAKVSDFGKVSAGTRHVLTEKSDVYGFGVVLLELLTGKKPILKNEEDGSTRLHVIDFAEPAILAGELVKILDPRVGPPGVNEVEALELVADTAIHCVKREGKDRPTMADIVFNLERALATCGNGHRSPEKIMGLLIAITR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0238 457 Gene3D Transferase(Phosphotransferase) domain 1 331 438 - -
Gso18g0238 457 ProSiteProfiles Protein kinase domain profile. 174 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0238 457 Gene3D Phosphorylase Kinase; domain 1 137 252 - -
Gso18g0238 457 SUPERFAMILY Protein kinase-like (PK-like) 154 431 IPR011009 -
Gso18g0238 457 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 84 442 - -
Gso18g0238 457 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 84 442 IPR044815 GO:0004674
Gso18g0238 457 Gene3D Transferase(Phosphotransferase) domain 1 253 330 - -
Gso18g0238 457 Pfam Protein tyrosine and serine/threonine kinase 177 325 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0238 Gso-Chr18 2073801 2075174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0238 162 444 Receptor kinase-like Gene Family AT3G55950 55.901 2.79e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso18g0238 PK_Tyr_Ser-Thr 5.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0238 - - gsj:114396198 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0238 18 2073801 2075174 Gso18g0238 18 2073801 2075174 ECH
Gso18g0238 18 2073801 2075174 Gso13g1384 13 29339317 29340818 GST
Gso18g0238 18 2073801 2075174 Gso14g0501 14 4807988 4810785 PCT
Gso18g0238 18 2073801 2075174 Gso2g2188 2 46552331 46555084 PCT
Gso14g0501 14 4807988 4810785 Gso18g0238 18 2073801 2075174 PCT
Gso2g2188 2 46552331 46555084 Gso18g0238 18 2073801 2075174 PCT