Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0227 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGCTGGCACATGGGCAACAGCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCTTCCTTTGCAGTGCCTATACAAATACTCCCTCATCATGTCACTGACTCTGCCTCTCTTCAGTTTGGTGAGTTTCATTCATGGCCACTTCCCATTGAAGGGGCTGCAGAAGAAAGAGCAATAAGTGCTTCCAAGAGTCACAGCCAAGCAGAGAAAAGGCGCAGAGACAGGATCAACGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAGTCAGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTGAAAGATCTAAAGCGAAAAGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACAGAAATTGATGAAGTATCAATTGACTATGACCATGTTCAAGACGAAAGCTGCACTAAAGTGAACAAACAGAAGGACAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAGAGAAGACAGTGTTTGCCTTGCCACTCTCAAACAGTCCCTCAAATCTGCTGTCACCAAAATTGCTTCATCATCCATGGCTTCTAGTTGCCCCGCTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCACTGCCTACAGTAA 828 0.4408 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGNSSWAQCSDHSSSSFAVPIQILPHHVTDSASLQFGEFHSWPLPIEGAAEERAISASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIDYDHVQDESCTKVNKQKDNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDREDSVCLATLKQSLKSAVTKIASSSMASSCPARSKRQRFFLPSHCLQ* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0227 275 Gene3D - 80 144 IPR036638 GO:0046983
Gso18g0227 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 135 IPR011598 GO:0046983
Gso18g0227 275 PANTHER TRANSCRIPTION FACTOR BHLH30 55 273 IPR045847 GO:0003700|GO:0006355
Gso18g0227 275 PANTHER TRANSCRIPTION FACTOR BHLH51 55 273 - -
Gso18g0227 275 CDD ACT_UUR-ACR-like 182 217 - -
Gso18g0227 275 SMART finulus 92 141 IPR011598 GO:0046983
Gso18g0227 275 CDD bHLH_AtAIG1_like 81 160 - -
Gso18g0227 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 138 IPR036638 GO:0046983
Gso18g0227 275 Pfam Helix-loop-helix DNA-binding domain 89 135 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0227 Gso-Chr18 1962040 1963860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0227 21 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.966 7.45e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g0227 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0227 - - gmx:100799687 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0227 18 1962040 1963860 Gso18g0227 18 1962040 1963860 ECH
Gso18g0227 18 1962040 1963860 Gso13g1393 13 29457535 29459344 GST
Gso18g0227 18 1962040 1963860 Gso14g0493 14 4670253 4672042 PCT
Gso18g0227 18 1962040 1963860 Gso2g2197 2 46684391 46686312 PCT
Gso14g0493 14 4670253 4672042 Gso18g0227 18 1962040 1963860 PCT
Gso2g2197 2 46684391 46686312 Gso18g0227 18 1962040 1963860 PCT