Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso18g0226 | ATGTCGAGCCCAGATTCTCGATCATTCAGTTGGCACTACACGGAACTCGATGACAGAGACCTCGAGATCCGAGGTAGGACTCTGTTTTTTGTCATCGTACTCTTCTCCATTATTCTCCTCGTCACTGTTCTCTTCATCTACACGCGCTGGGTTTGCCGCTACCAGGGACGCCTCCCCACCACCGCGTTCACCGCCGCAGCCGCCCACGCGCCGCCGCTCGCGCAGCCTCAGGGAATGGACCCAGCTTCCATCAAGAAATTGCCCATAATCCTCCACCACGCGCCGTCGGACCGCGAGGAAAGCGCGTGGGACGAAACGGAGTGCTGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGTGACCACTATTTCCACTGTGATTGTGTTGACAAGTGGCTCACTCATCACTCTAGTTGCCCTCTTTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCTAAGATTTTGATTCAGGAACCACCCCTTAGAATTGACTTCCAGTTCTAG | 528 | 0.5473 | MSSPDSRSFSWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGRLPTTAFTAAAAHAPPLAQPQGMDPASIKKLPIILHHAPSDREESAWDETECCICLGEFRDGEKVKVLPACDHYFHCDCVDKWLTHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF* | 176 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso18g0226 | 175 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 156 | IPR013083 | - | |
Gso18g0226 | 175 | SUPERFAMILY | RING/U-box | 98 | 156 | - | - | |
Gso18g0226 | 175 | PANTHER | RING-H2 FINGER PROTEIN ATL66 | 2 | 165 | - | - | |
Gso18g0226 | 175 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 2 | 165 | IPR044675 | - | |
Gso18g0226 | 175 | SMART | ring_2 | 108 | 149 | IPR001841 | - | |
Gso18g0226 | 175 | CDD | RING-H2_PA-TM-RING | 107 | 150 | - | - | |
Gso18g0226 | 175 | Pfam | Ring finger domain | 107 | 150 | IPR001841 | - | |
Gso18g0226 | 175 | ProSiteProfiles | Zinc finger RING-type profile. | 108 | 150 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso18g0226 | Gso-Chr18 | 1951993 | 1952998 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso18g0226 | 11 | 158 | C3H Transcription Factor Family | AT3G11110 | 43.333 | 1.52e-36 | 122 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso18g0226 | - | - | gmx:100794927 | 358.221 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g0226 | 18 | 1951993 | 1952998 | Gso13g1394 | 13 | 29468872 | 29469812 | GST | |
Gso18g0226 | 18 | 1951993 | 1952998 | Gso14g0491 | 14 | 4653839 | 4654662 | PCT | |
Gso14g0491 | 14 | 4653839 | 4654662 | Gso18g0226 | 18 | 1951993 | 1952998 | PCT |