Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0226 ATGTCGAGCCCAGATTCTCGATCATTCAGTTGGCACTACACGGAACTCGATGACAGAGACCTCGAGATCCGAGGTAGGACTCTGTTTTTTGTCATCGTACTCTTCTCCATTATTCTCCTCGTCACTGTTCTCTTCATCTACACGCGCTGGGTTTGCCGCTACCAGGGACGCCTCCCCACCACCGCGTTCACCGCCGCAGCCGCCCACGCGCCGCCGCTCGCGCAGCCTCAGGGAATGGACCCAGCTTCCATCAAGAAATTGCCCATAATCCTCCACCACGCGCCGTCGGACCGCGAGGAAAGCGCGTGGGACGAAACGGAGTGCTGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGTGACCACTATTTCCACTGTGATTGTGTTGACAAGTGGCTCACTCATCACTCTAGTTGCCCTCTTTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCTAAGATTTTGATTCAGGAACCACCCCTTAGAATTGACTTCCAGTTCTAG 528 0.5473 MSSPDSRSFSWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGRLPTTAFTAAAAHAPPLAQPQGMDPASIKKLPIILHHAPSDREESAWDETECCICLGEFRDGEKVKVLPACDHYFHCDCVDKWLTHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0226 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 156 IPR013083 -
Gso18g0226 175 SUPERFAMILY RING/U-box 98 156 - -
Gso18g0226 175 PANTHER RING-H2 FINGER PROTEIN ATL66 2 165 - -
Gso18g0226 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 165 IPR044675 -
Gso18g0226 175 SMART ring_2 108 149 IPR001841 -
Gso18g0226 175 CDD RING-H2_PA-TM-RING 107 150 - -
Gso18g0226 175 Pfam Ring finger domain 107 150 IPR001841 -
Gso18g0226 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0226 Gso-Chr18 1951993 1952998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0226 11 158 C3H Transcription Factor Family AT3G11110 43.333 1.52e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0226 - - gmx:100794927 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0226 18 1951993 1952998 Gso13g1394 13 29468872 29469812 GST
Gso18g0226 18 1951993 1952998 Gso14g0491 14 4653839 4654662 PCT
Gso14g0491 14 4653839 4654662 Gso18g0226 18 1951993 1952998 PCT