Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0225 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGCTATTGAAGAGAAGATGCATACCAAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGCAAGAAGTTTGCAAAGGTGCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATTCTGATTGAAGTGCCAGAAGAGCAGAGAGAGGACACGGTGAATTCTCTGGCTTATGAGGCTGAGGCAAGGCTGAGAGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGATCTGGCAATTGCAAAGGATCGTCTTGCGCGTTGTCACGCTGCTGCTGCTGCTGCTACTACTACTATCCCTTCTCCTGATATCTTGCATGCCAATGTTAGCCTTCCCCCATTCCCTGACTTTTGCACTTCTTCAAGTGATTTCAATGATATCTTTTGCCACAGTTCTTCGTCTCAATTATTAGGCCGACATGAAACGGTGGATGATTTCAATCAAATCCCATATATATTTTGA 540 0.45 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAAAAATTTIPSPDILHANVSLPPFPDFCTSSSDFNDIFCHSSSSQLLGRHETVDDFNQIPYIF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0225 179 Coils Coil 90 110 - -
Gso18g0225 179 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Gso18g0225 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 173 - -
Gso18g0225 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 173 - -
Gso18g0225 179 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0225 Gso-Chr18 1933860 1934800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0225 1 143 AS2 family AT3G11090 66.434 1.01e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso18g0225 LOB 1.4e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0225 18 1933860 1934800 Gso18g0225 18 1933860 1934800 ECH
Gso18g0225 18 1933860 1934800 Gso13g1395 13 29483887 29484835 GST