Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0215 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCCTATTTCCCTTCCAATGATCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTTCAGGAACTTCCGGCTCACCAGAGAGGGGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGGGACCCGGTGTATGGTTGTGTTGGAGCCATATCCCATCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCACTGATGCCAAACCCAGAAATGGAAGACCCAGATCAGAAATCTTACCTTCTCCAAAATGAACTCCCTCAGTACCTCAACTATGCCTCTTCTAGCAACGTAATTTATGATTCTTTCTCAAGAGAGAGCATTTTTGGACATGACATGGTTTCTTGA 498 0.4639 MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPAHQRGDAVSSLVYEAHARVRDPVYGCVGAISHLQNQVSELQMQLAVAQAEILCIQMQQEPLMPNPEMEDPDQKSYLLQNELPQYLNYASSSNVIYDSFSRESIFGHDMVS* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0215 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 157 - -
Gso18g0215 165 Coils Coil 85 105 - -
Gso18g0215 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 157 - -
Gso18g0215 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Gso18g0215 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0215 Gso-Chr18 1856218 1857273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0215 3 132 AS2 family AT2G30130 78.195 1.05e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso18g0215 LOB 4.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0215 - - gmx:100805733 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0215 18 1856218 1857273 Gso18g0215 18 1856218 1857273 ECH
Gso18g0215 18 1856218 1857273 Gso13g1406 13 29569174 29570094 GST
Gso18g0215 18 1856218 1857273 Gso14g0479 14 4550615 4551720 PCT
Gso14g0479 14 4550615 4551720 Gso18g0215 18 1856218 1857273 PCT