Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0209 ATGGAGGCCATGATTTTGAACGGTGTTCTTCTTGGAAACAGTTATGGGGTGGTAGCTCGCGTGGCTGTGGCGGGTCTTCGTGGTGGAGTGACGGCCTTCGAGGCATATTTGTCTCGGTCATGGCGAGCTGTGGAGCTCATAAAATTTGAGTCTGGAACTACGACCCTATATTTTGTAGATAATCACCATATGACCATTAAGAAAGGCTCCTTTTCAGACGTTCGAGTTAGGTCAAGGAAAGCTACTTTATCAGATTGCTCCTTTTTACGAACTGGGATTGACATATGTGTTCTCTCAGCCTCTCAGGGTAATGACAATTCAGATGAATCTAGTGCTAATCATGTGTGGCTTGATGCTAAAATAAATTCCATACAGAGAAAACCACATAATCCAGAGTGCTCATGTCAGTATTATGTAAACTTCTATGTTAATCAAGGTTCACTTGGTACAGAGCTGAGAACTCTTAGGAAGGAGGTTAAAGTAGTTGGAATAAATGAAATTGCCATCCTCCAAAAGCTTGAACGTAATACTTGTCAACACAAATACTATCGATGGGAATCATCTGAAGACTGCTCCAAAGTGCCACATACTAAATTGTTAGGAAAATTTATATCTGACCTTTCATGGTTGGTTGTTGCATCTGCTATAAGGAAGGTTTCATTCTGTGCAAGATCTGTGGAAAACAATATTGTGTATCAAATTTTAGGGAGTGATGCCACAACCTCTTCATTATACATGGATTCTGAAATAAGTGTTGTGAACTTTAAAGTGAACGAAGACGGCACGCAAATGCCTGTTATTCATCTAGTTGATTTATTTGAGACTGACACCAATACAAGCGGCGATAAACATGATTCCCATTATGATGAAGTGCCATCATCTTATGGTTTTGAGGGCTTACGACGATCCAAACGTAGGAACATACAACCTGAACGTTACTCTGATTGTGGTAATGTTTCTGAGATAAAGGTTGGTAATGTTCGAACCTGGCCATACAAGTTAAACAAAAGGAAAGATGATGATGATGGTGGTGAAGAGTCATTGCCATTAGCACAAGAGAATAGTGACAATAGTCAAAAGGTCAATGAACTGAGTTCTTGCCAGGAGATTATAGTGTACCATGGGAGGAATGAAACGCTGGAATTAAAGTCAGGTGAGGCCAATCAAACTCAACTTGCTAGTGTTCCTCTTCTTGAAGAAGGTGATTCATTAGCCCTTGAGCATCATCATCTCAATGACAATGTTACTAGAAGAAGTGATGCATATTATAGCACCCCTAAGCTTAAGAGGAAGAGATTAGTTGATCTGGAAGCTGATGTAGATTTTGATCCTGGAAGGGAAGGCATAAATTCCAATAAAGGAGTTAGCGAGAAAAGACATGGTTCATCATGGTATTCAAGAAGCAGAAGCCATGCTGCAGAACACAGTTATAAAGACAGAAGCTTAAATGCAACTGCCTACAAGGAAATGATAGATTCATACTTGAAGGATGTCAATAGAACACCAACTACAGAAGAGCCACCTGTAATGGACCAGCGGAAGGAAATAGGCAACTTTGGGCAAAAGAAGGAAGCAGAAATACCTGAAAGAGAGGACGAGGAGCAAATCTCTGAGATCGATATGTTGTGGAGAGAAATGGAAATGGCACTGGCATCAAGTTATCTTGAAGAAACAGAGGGTTCAAATAGTGCCAATTTTGCCAAGACTACGGAAGAATCTAATCGCACTTGTCCGCATGATTACAGATTGTCTGAAGAAATTGGAATTTATTGCTACAAATGTGGCTTTGTGAAAACCGAGATAAAATATATTACGCCACCCTTCATTGAAATGCAACGCTCAGTGAGGCACCAAGAGGAAAAGCAATGCAATGGAAAAGATACAAAGGAAAAGGCTAGTAAAGATGATGATTTCCATCTGCTCTCAACTCATGCTCCTACAGATGAACATAACTCTATGGAACATGATAACGTTTGGAAGTTAATTCCCCAATTTAGAGAAAAGTTGCATGACCACCAAAAGAAGGCTTTTGAATTTCTTTGGCAAAATATTGGAGGGTCTATGGAGCCAAAACTTATGGATGCAGAATCCAAAAGAAGAGGGGGTTGTGTGATATCTCATGCTCCTGGAGCTGGTAAAACTTTTCTCATCATTGCATTTCTCGTTAGCTATTTAAAGCTATTCCCAGGGAAGAAGCCTCTTATCCTTGCTCCAAAAGGCACACTTTACACTTGGTGCAAAGAATTCAACAAGTGGGAAATTTCTATGCCAGTGTATCTGATTCATGGGCGTGGTGGAACTCAGAAAGATACTGAGCAAAATTCAATTGTTCTTCCTGGTTTTCCAAATCCAAATAAAGATGTCAAGCATGTTTTGGACTGCTTGCAAAAGATAAAACTGTGGCAAGAGAAACCAAGTGTTTTGGTCATGAGCTATACTGCATTTTTAGCATTAATGAGAGAGGGTTCAGAGTTTGCACACAGAAAATATATGGCTAAAGCATTGAGGGAAGGTCCTGGGATCTTGATACTTGATGAAGGGCACAATCCAAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAACTGAAAACAGATCTAAGAATACTACTTTCCGGTACATTATTTCAGAACAATTTTTGTGAATACTTCAACACACTTTGCTTGGCAAGACCAAAGTTTATCTCCGAAGTGCTTGATACATTAGACCCGATTACCAGAAGGAAAAGCAAAACAGTAGAAAAGGCAGGTCATTTGCTAGAATCACGAGCTAGAAAATTGTTCTTAGATAAAATTGCTAAGAAAATTGACTCGGGTATTGGAAATGAGAGGATGCAGGGTCTAAACATGTTGAGAGAAACCACAAATGGTTTTGTAGATGTTTATGAGAGTGAAAATTTTGATAGTGCTCCTGGTTTACAAATCTACACGTTGCTAATGAATACAACTGACAAGCAGCGTGAGATTTTGCCAAAACTACACACGAGAGTGGACGAGTGCAATGGTTACCCTCTAGAGCTAGAGCTTTTGGTAACTCTTGGATCAATACATCCATGGTTGGTTAAAACAACCTCATGCGCAAATAAGTTTTTCACTGCGGACCAATTGAAGCAGCTAGACAAATACAAGTATGATATGAAAGCAGGATCAAAAGTTAAATTTGTTCTGAGCCTTGTTTTCCGTGTTATGCAGAGAGAGAAAGTACTTATCTTCTGCCACAACCTTGCACCTGTGAAGTTATTGATAGAGTTATTTGAGATGTTCTTCAAATGGAAAAAAGATAGAGAAATTCTGCTGCTTAGTGGGGAACTAGACCTCTTTGAACGCGGGAAAGTGATAGATAAGTTTGAGGAGCATGGAGGAGCATCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTAACAGCAGCTTCTAGAGTGATTTTTTTGGACTCAGAATGGAATCCATCGAAAACAAAACAGGCTATTGCACGGGCTTTTCGTCCTGGTCAAGAAAAAATGGTTTACGTTTATCAGCTCTTGGTAACAGGCACATTGGAGGAAGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTTTCTAGCATGATTTTTAGTGAGGCTTTTGAGCAGAACCCTTCACATTCGCGAGCAGTGAACATTGAAGATGATATACTGAGGGAAATGGTTGAGGAGGACAAGTCTAAAACTATTCATATGATTCTAAAGAATGAAAAGGCTTCAACAAATTGA 3750 0.3973 MEAMILNGVLLGNSYGVVARVAVAGLRGGVTAFEAYLSRSWRAVELIKFESGTTTLYFVDNHHMTIKKGSFSDVRVRSRKATLSDCSFLRTGIDICVLSASQGNDNSDESSANHVWLDAKINSIQRKPHNPECSCQYYVNFYVNQGSLGTELRTLRKEVKVVGINEIAILQKLERNTCQHKYYRWESSEDCSKVPHTKLLGKFISDLSWLVVASAIRKVSFCARSVENNIVYQILGSDATTSSLYMDSEISVVNFKVNEDGTQMPVIHLVDLFETDTNTSGDKHDSHYDEVPSSYGFEGLRRSKRRNIQPERYSDCGNVSEIKVGNVRTWPYKLNKRKDDDDGGEESLPLAQENSDNSQKVNELSSCQEIIVYHGRNETLELKSGEANQTQLASVPLLEEGDSLALEHHHLNDNVTRRSDAYYSTPKLKRKRLVDLEADVDFDPGREGINSNKGVSEKRHGSSWYSRSRSHAAEHSYKDRSLNATAYKEMIDSYLKDVNRTPTTEEPPVMDQRKEIGNFGQKKEAEIPEREDEEQISEIDMLWREMEMALASSYLEETEGSNSANFAKTTEESNRTCPHDYRLSEEIGIYCYKCGFVKTEIKYITPPFIEMQRSVRHQEEKQCNGKDTKEKASKDDDFHLLSTHAPTDEHNSMEHDNVWKLIPQFREKLHDHQKKAFEFLWQNIGGSMEPKLMDAESKRRGGCVISHAPGAGKTFLIIAFLVSYLKLFPGKKPLILAPKGTLYTWCKEFNKWEISMPVYLIHGRGGTQKDTEQNSIVLPGFPNPNKDVKHVLDCLQKIKLWQEKPSVLVMSYTAFLALMREGSEFAHRKYMAKALREGPGILILDEGHNPRSTKSRLRKGLMKLKTDLRILLSGTLFQNNFCEYFNTLCLARPKFISEVLDTLDPITRRKSKTVEKAGHLLESRARKLFLDKIAKKIDSGIGNERMQGLNMLRETTNGFVDVYESENFDSAPGLQIYTLLMNTTDKQREILPKLHTRVDECNGYPLELELLVTLGSIHPWLVKTTSCANKFFTADQLKQLDKYKYDMKAGSKVKFVLSLVFRVMQREKVLIFCHNLAPVKLLIELFEMFFKWKKDREILLLSGELDLFERGKVIDKFEEHGGASKVLLASITACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYQLLVTGTLEEDKYKRTTWKEWVSSMIFSEAFEQNPSHSRAVNIEDDILREMVEEDKSKTIHMILKNEKASTN* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0209 1249 SMART ultradead3 665 909 IPR014001 -
Gso18g0209 1249 MobiDBLite consensus disorder prediction 443 477 - -
Gso18g0209 1249 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 33 1248 - -
Gso18g0209 1249 MobiDBLite consensus disorder prediction 334 362 - -
Gso18g0209 1249 MobiDBLite consensus disorder prediction 455 470 - -
Gso18g0209 1249 MobiDBLite consensus disorder prediction 615 652 - -
Gso18g0209 1249 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1055 1224 IPR001650 -
Gso18g0209 1249 Pfam Helicase conserved C-terminal domain 1052 1168 IPR001650 -
Gso18g0209 1249 SMART helicmild6 1084 1169 IPR001650 -
Gso18g0209 1249 CDD SF2_C_SNF 1044 1180 - -
Gso18g0209 1249 Pfam SNF2-related domain 696 935 IPR000330 GO:0005524|GO:0140658
Gso18g0209 1249 Gene3D - 639 936 IPR038718 -
Gso18g0209 1249 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 33 1248 IPR044567 GO:0080188
Gso18g0209 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1207 IPR027417 -
Gso18g0209 1249 Pfam SAWADEE domain 43 142 IPR032001 GO:0003682
Gso18g0209 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 910 IPR027417 -
Gso18g0209 1249 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 694 894 IPR014001 -
Gso18g0209 1249 Gene3D - 977 1249 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0209 Gso-Chr18 1789294 1798072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0209 1035 1187 RAD5 or RAD16-like Gene Family AT5G43530 32.051 2.85e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso18g0209 SNF2_N 1.2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0209 K10875 - gmx:100781856 2446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0209 18 1789294 1798072 Gso18g0209 18 1789294 1798072 ECH
Gso18g0209 18 1789294 1798072 Gso14g0475 14 4498935 4506313 PCT
Gso14g0475 14 4498935 4506313 Gso18g0209 18 1789294 1798072 PCT