Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0193 ATGGTTTCTAGAGAGCAAAAGAGAGCAACACTGAATGAGAAGCTGCAACTTCTTCGTTCTATAACCAACTCTAATGCTCTAGACAAAACCTCGATCATAATAGATGCATCAAAGTATATCGAAGAGTTAAAGGAAAAAGTAGAAAGACTGAACCAAGACGTAGCCAACGCACAAACTTCCAGTGACCAAAATACTTTGCCTATGGTTACAGTAGAAACCTTAGAGAAGGGATTTCTTATAAATGTTTTTTCAGCAAAGAGCTGCCCCGGTCTGCTTGTTTCCATATTGGAGTCATTTGAAGAGATGGGTCTTCATGTGCTTGAAGCTAGGGTTACTTGTAAGGACACCTTTCGATTTCATGCTGTTGGAGGAAAAAATGAAGAACAAGGTGATGAGGACATTGATGCACAAGCTGTGAAACAGGCAATGGGACAAGCAATAAAGAACTGGAGCCAAAATGCTGACCAAAAGTAA 474 0.4008 MVSREQKRATLNEKLQLLRSITNSNALDKTSIIIDASKYIEELKEKVERLNQDVANAQTSSDQNTLPMVTVETLEKGFLINVFSAKSCPGLLVSILESFEEMGLHVLEARVTCKDTFRFHAVGGKNEEQGDEDIDAQAVKQAMGQAIKNWSQNADQK* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0193 157 Gene3D - 3 66 IPR036638 GO:0046983
Gso18g0193 157 PANTHER TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN 1 155 - -
Gso18g0193 157 Coils Coil 33 60 - -
Gso18g0193 157 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 60 IPR036638 GO:0046983
Gso18g0193 157 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0193 Gso-Chr18 1672435 1674146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0193 11 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 31.034 6.63e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0193 - - gmx:100813030 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0193 18 1672435 1674146 Gso18g0193 18 1672435 1674146 ECH
Gso3g0341 3 5183953 5186116 Gso18g0193 18 1672435 1674146 ECH
Gso11g1651 11 20603009 20606132 Gso18g0193 18 1672435 1674146 ECH
Gso18g0193 18 1672435 1674146 Gso13g1426 13 29756803 29758464 GST
Gso18g0193 18 1672435 1674146 Gso14g0458 14 4373247 4375133 PCT
Gso14g0458 14 4373247 4375133 Gso18g0193 18 1672435 1674146 PCT