Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0187 ATGGAGAAAAGAGGGAATGTGTTGATGGAGAAGTATGAGTTTGGGAAGCTATTAGGTCAAGGAAACTTTGCGAAGGTTTACCATGCAAGGGACGTCAGAACTGGTGAGAGTGTTGCCGTTAAGGTGATTGACAAGGAGAAAGTTCTAAAAATTGGGCTGGTGGATCAAACGAAGCGAGAGATATCGATTATGAGACTGGTTAAACACCCCAATGTTTTGCAGCTTTATGAGGTCTTGGCCACCAAGACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACAAGGTAGCTAAAGGTAGACTCACTGAGGACAAGGCAAAGAAGTACTTTCAACAATTGGTCAGTGCTGTTGATTTTTGCCACAGCAGGGGTGTTTATCACAGAGATTTGAAGCCAGAGAACTTGCTTTTGGATGAGAATGGAGTTCTCAAGGTTGCGGATTTTGGATTGAGTGCACTTGTTGAATCTCACCGGCAAAAAGACATGCTGCATACAATTTGTGGAACTCCTGCATATGTGGCTCCTGAGGTTATAAGTAGAAGGGGCTATGATGGAGCAAAAGCTGATGTATGGTCTTGTGGAGTGATCTTATTTGTTCTTTTGGCTGGTCATTTGCCATTCTATGATTTGAATCTTATGTCACTGTATAAGAAAATAGGCAAGGCGGAATACAAATGTCCAAACTGGTTTCCATTTGAAGTGCGCAGACTGTTAGCGAAAATCCTTGACCCCAACCCAAATACCAGGATATCCATGGCAAAAGTTATGGAAAATTCGTGGTTCAGAAAAGGATTCAAACCTAAATCTGGTCAAGTGAAAAGAGAGGCTGTTGATGTGGCTTTAGTTGTTTCTGATCAAATTTTTGGCTTGTGTGAGAATACAAGTGCTGCTGTTGTTGAGGCAGAGCAAGCAGTGGTTAAACCTGCACATTTTAATGCTTTCAATATAATTTCTCTGTCTGCTGGGCTTGACTTGTCTGGCCTCTTTGCTGGCAATGTTGAACTGGATGATACCAAATTTACATTTATGAGCTCTGCCTCATCAATCATGTCTACCATGGAGGATATTGCTCGCACTTTGAGGATGGAGATAATTAAGAAGGATGGAGGGTTGCTGAAATTGGAGAGATCCAAGGAGGGTAGAAAAGGACCACTTTCCATTGATGCTGAAATATTTGAGGTCGCCCCATCTTTCCATTTGGTTGAGCTGAAGAAGTCCAGCGGTGATACATTAGAATACCAGAAGATATTGGAGGACTTAAGACCAGCTCTCAAAGATATTGTCGGTGTTTGGCAAGGTGAGCAGCATGCAGTAGCAAGGTTGTGTACTCCTTAA 1350 0.4222 MEKRGNVLMEKYEFGKLLGQGNFAKVYHARDVRTGESVAVKVIDKEKVLKIGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNKVAKGRLTEDKAKKYFQQLVSAVDFCHSRGVYHRDLKPENLLLDENGVLKVADFGLSALVESHRQKDMLHTICGTPAYVAPEVISRRGYDGAKADVWSCGVILFVLLAGHLPFYDLNLMSLYKKIGKAEYKCPNWFPFEVRRLLAKILDPNPNTRISMAKVMENSWFRKGFKPKSGQVKREAVDVALVVSDQIFGLCENTSAAVVEAEQAVVKPAHFNAFNIISLSAGLDLSGLFAGNVELDDTKFTFMSSASSIMSTMEDIARTLRMEIIKKDGGLLKLERSKEGRKGPLSIDAEIFEVAPSFHLVELKKSSGDTLEYQKILEDLRPALKDIVGVWQGEQHAVARLCTP* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0187 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gso18g0187 449 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Gso18g0187 449 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 441 - -
Gso18g0187 449 Gene3D Kinase associated domain 1, KA1 311 436 - -
Gso18g0187 449 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0187 449 PANTHER - 2 441 - -
Gso18g0187 449 Pfam NAF domain 313 371 IPR004041 GO:0007165
Gso18g0187 449 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gso18g0187 449 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0187 449 Gene3D Transferase(Phosphotransferase) domain 1 92 285 - -
Gso18g0187 449 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Gso18g0187 449 SUPERFAMILY Protein kinase-like (PK-like) 8 287 IPR011009 -
Gso18g0187 449 CDD CIPK_C 317 430 - -
Gso18g0187 449 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0187 Gso-Chr18 1634543 1639179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0187 1 440 CBL-interacting serine-threonine protein kinases AT5G58380 59.956 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso18g0187 Pkinase 1.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0187 K07198 - gmx:100801834 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0187 18 1634543 1639179 Gso13g1431 13 29793494 29797471 GST