Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0181 ATGAATTCAGCATCCCCGCAGTTTGTTTCCTCAAGAAGGATGAGTGTGTACGATCCGATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGAAATTTAAGTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGGCAACAAAACTGCAGGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATAGACAAATCACAGAACTGAGAAATGCTTTAAATGCTCATATTGGTGACGTAGAGCTCAGGATTTTAGTAGATGGTATGATGAGCCACTATGCCGAAATGTTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTCTTCTATGTTATGTCCGGCATGTGGAAAACAACAGCTGAAAGATTTTTCCTATGGATTGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGCCCCCTGATTGAACCCCTGACGGAGCAACAACGTTTGGATATCTATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGGCAGTTCATGGAAGGAACATATATTCCACAGATGACTTCTGCAATGGACAAGTTGAAAGCTCTGGTGAGCTTTGTGAACCAGGCTGATCATCTTCGGCAGGAAACTTTGCAGCAAATGTCTCGAATACTTACAATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAATAGACCTCGTGAACCTGCTTAG 1104 0.4429 MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSAAMPLIDETDMKFDSQSEDASHGILGEPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQATKLQGIYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQNRQITELRNALNAHIGDVELRILVDGMMSHYAEMFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTSAMDKLKALVSFVNQADHLRQETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0181 367 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Gso18g0181 367 MobiDBLite consensus disorder prediction 53 77 - -
Gso18g0181 367 Pfam Seed dormancy control 169 243 IPR025422 GO:0006351|GO:0043565
Gso18g0181 367 Coils Coil 97 131 - -
Gso18g0181 367 Pfam bZIP transcription factor 76 121 IPR004827 GO:0003700|GO:0006355
Gso18g0181 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Gso18g0181 367 PANTHER TRANSCRIPTION FACTOR TGA1 1 366 - -
Gso18g0181 367 Coils Coil 163 183 - -
Gso18g0181 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Gso18g0181 367 SUPERFAMILY Leucine zipper domain 78 124 IPR046347 GO:0003700|GO:0006355
Gso18g0181 367 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Gso18g0181 367 PANTHER TRANSCRIPTION FACTOR TGA9 1 366 - -
Gso18g0181 367 Gene3D - 77 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0181 Gso-Chr18 1580131 1586039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0181 1 367 Calmodulin-binding Proteins AT5G10030 69.106 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso18g0181 DOG1 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0181 K14431 - gmx:100793353 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0181 18 1580131 1586039 Gso13g1439 13 29873797 29879602 GST
Gso5g1551 5 38932560 38940318 Gso18g0181 18 1580131 1586039 PCT
Gso8g1182 8 10810738 10817370 Gso18g0181 18 1580131 1586039 PCT