Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0178 ATGAAACCTCTCTCTAAGCTCTTAAACAAGCTTTGTGGGAAAATGATAATGCTATTAGCATCCCTTCTAATAGAGCTTATCATTCTCATTCAGAAGCTAAGGGAATCACGTCCCATCAGCACCCGCCAATACATCAAACTCATCGAGAAGAAGAACCCCACAATTTGCTACACCAAAAGATTTAACTTGAAGGCAGAGCACGCTACAGAGTGCAGGGTATGCTTGTCCGAATTCGAGCAAGGGGAGAAGCTGAGGAAGCTCAAATGCCAACACACGTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAGTACTGGGCTACGTGCCCACTTTGTCGGAAACAGGTGTTGCCTGATGATGTTGTGTTCAAGCACCGTCAGCATCAGAATCAACCAGAGGCTGCTTCTAATGGGAATCATGACAATCTTCTCTATCTTTTTTCAGCATTTCGTGGTGGCAACACTTAA 468 0.4444 MKPLSKLLNKLCGKMIMLLASLLIELIILIQKLRESRPISTRQYIKLIEKKNPTICYTKRFNLKAEHATECRVCLSEFEQGEKLRKLKCQHTFHRDCLDKWLQQYWATCPLCRKQVLPDDVVFKHRQHQNQPEAASNGNHDNLLYLFSAFRGGNT* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0178 155 SUPERFAMILY RING/U-box 59 119 - -
Gso18g0178 155 Pfam Ring finger domain 70 113 IPR001841 -
Gso18g0178 155 CDD mRING-H2-C3H2C2D_ZSWM2 70 113 - -
Gso18g0178 155 SMART ring_2 71 112 IPR001841 -
Gso18g0178 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 - -
Gso18g0178 155 PANTHER - 1 155 - -
Gso18g0178 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 118 IPR013083 -
Gso18g0178 155 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0178 Gso-Chr18 1547178 1548158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0178 57 124 C3H Transcription Factor Family AT1G15100 44.118 5.43e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0178 K16282 - gmx:102668078 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0178 18 1547178 1548158 Gso13g1442 13 29908110 29908935 GST
Gso5g1548 5 38898790 38899610 Gso18g0178 18 1547178 1548158 PCT
Gso8g1180 8 10782044 10782718 Gso18g0178 18 1547178 1548158 PCT