Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0164 ATGGGGGAAGGTAGTACTAGTACTAGAGATATGAGCACCGATAAAATAAATGTTGATTTAAATGAATATCCAATTGAAGATATTTCTTTAGAGAATGGTTATTCAGGAACAGTTAGTGAACATTTTGATCATGATATTGTGGCAAATGATGTATTAGAAGTTGAGGAAATTGAAACTTATGAGAAAGAAAATATTGTGTCTTCTAGTCAGAATATTGAGATAAATGAATTTGCAGAAGAAGTTGATAGAGATGAAACTTATAATGAGACAAATATTGTTCCTTTTGTTGGTCAAATTTTTCTTAGCGAGGAAGAAGCATTTGCATTTTATAAGAGGTATGCATATCAGCATGGGTTCTCTGTTCGAAAAGGTAGATTCATCAAACGAAATGGAATTATGAGGAGGCGTGATTTTTTTTGCCATCGTGAAGGTAGAAGCTCGTTGAAAATCATAGAACCATTAAAAGAACAGAGAAACAGAGAATCAACAAGGTGTGAATGTAAAGCTTATTTAAGAATTTCATTGCAGAAGTCTCATGATATATTTCCAAGTGAGTGGCGAGTTACAAAGTTTGTTGTTGAACATAACCATGTTTTGCTAACCCAATCAGAAGTGCGTTTTTTACCGGCTAACCGAACTATCTCTGAAGATGATATTGAACGCATTTTCTTGTTAAAAGAAGGGGGGCTTTCAGTTAGACAATTGATGCGTGTCATAGAATTAGAGAAAAATGTGAAGCATGGTTATCTTCCATTTATTGAAAGGGACATTCGTAATCTTTTTGTGAAAACCAAGAAAAAAGTTGAAAGAAATGATGCCAAAGATCTTCTCAAGTACTGTGAGGATGCAAAAAAGAGTTGCTCTAAATTTCAGTATGCATATACACTTGATGAAGAGAGAAGGTTAGAGCATATTTTTTGGTCTCCTGCTTCTTGCTCTGATTGGTACCAAAAATATGGTGATGTTGTTGTGTTTGATACTACATACAAGGTCAATTCTTATGAAATGCCATTTGGGATTTTTGTGGGTATGAATAGTCATGGGAAGACTGTACTTTTTGGTTGTGCACTCTTACGAAATGAAACAATATCTGCATTTCGTTGGTTAATGAAGCCACCAAAGACTATACTAACGGATCAAGATCCATGGATGAAAGAAGCAATTTCAAAAGACTTGCCATCAAAAAAACATAGTTTTTGCATATGGCACATCACTTTTAAGTTTAGTAGTTGGTTTAATGCTATACTTCGGGACAAATATTCAAAATGGTGTTCTGATTTTTACGAGTTGTATAAATTGGAGACATGTGAAGAATTTGAGCATCAATGGCCAAAAGTTGTTGCTAAGTATAACTTGCAGTCAAATAAACATGTGAAAGGATTGTATGAAATCAGGAATTACTGGGCACTCGCTTATCTTCGTGACCATTTCTTTGGTGGGATGACAACTACCGGAAGATCAGAGAGTATTAATGCATTTATTAAAAGATTTATAAATTCTCACACAAGTTTAAGTGACTTTACAAAGCAGGTATGGTTTGATGTAGCGATTGATGATATTAAGCAAAAAGAAGACCATGACATAATGTTAGAAAAGTGCAAAAGAATTAACTTGAAGCTTATGTCACCCTTGCAAGAGCAAGCTCATGGTGTTCTTACAAGATTTGCTTTTCAGAAGTTTCAAGAGGAGTTTGAAAGGTCCACCCAATATTCAATTCATCATGAAAATGGTAATGAATTTGTGTTGCGGTATTATAAAGATGCTAATAGTAGAAAACACATGGTCTTTGGGGATGGTAAAATAGCTACATGTAGTTGCAAGTATTTTGAGTTTTGGGGTATATTATGTCGTCACATTCTCAGTATTTTTCTTCATAAAGATTGTCATGAAATCCCTTCTAACTACTTGCCGTCACGATGGCGGCTTCAAACATCACATGACGATGATGAAGTAGATCCCCAACAAGTCAATGTTGTCTTTGAGGAACAAGTCGATGTTGTTCACTGTCCTCCACCTTCCAAAACAAAAGGTCGTCCCAAACGAAGACGTCTTAAAGGTGGAAAAGAGCTATCACATAACATGAATACTTGTGGATTGTGCAAAGATGTAGGACATAATATTGTTACATGTCCTCTAAAAGAAAATACTCAATTTTCTGGTCACACAAACAAGAAGAAAAAAATTTGTAAAGATGCAAATTTAAATCCAATTCTTCTTCCAAAAGTTTAG 2229 0.3463 MGEGSTSTRDMSTDKINVDLNEYPIEDISLENGYSGTVSEHFDHDIVANDVLEVEEIETYEKENIVSSSQNIEINEFAEEVDRDETYNETNIVPFVGQIFLSEEEAFAFYKRYAYQHGFSVRKGRFIKRNGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKSHDIFPSEWRVTKFVVEHNHVLLTQSEVRFLPANRTISEDDIERIFLLKEGGLSVRQLMRVIELEKNVKHGYLPFIERDIRNLFVKTKKKVERNDAKDLLKYCEDAKKSCSKFQYAYTLDEERRLEHIFWSPASCSDWYQKYGDVVVFDTTYKVNSYEMPFGIFVGMNSHGKTVLFGCALLRNETISAFRWLMKPPKTILTDQDPWMKEAISKDLPSKKHSFCIWHITFKFSSWFNAILRDKYSKWCSDFYELYKLETCEEFEHQWPKVVAKYNLQSNKHVKGLYEIRNYWALAYLRDHFFGGMTTTGRSESINAFIKRFINSHTSLSDFTKQVWFDVAIDDIKQKEDHDIMLEKCKRINLKLMSPLQEQAHGVLTRFAFQKFQEEFERSTQYSIHHENGNEFVLRYYKDANSRKHMVFGDGKIATCSCKYFEFWGILCRHILSIFLHKDCHEIPSNYLPSRWRLQTSHDDDEVDPQQVNVVFEEQVDVVHCPPPSKTKGRPKRRRLKGGKELSHNMNTCGLCKDVGHNIVTCPLKENTQFSGHTNKKKKICKDANLNPILLPKV* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0164 742 Pfam FAR1 DNA-binding domain 109 200 IPR004330 -
Gso18g0164 742 SMART 26again6 602 629 IPR006564 GO:0008270
Gso18g0164 742 Pfam SWIM zinc finger 600 626 IPR007527 GO:0008270
Gso18g0164 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 642 IPR031052 GO:0006355
Gso18g0164 742 ProSiteProfiles Zinc finger SWIM-type profile. 584 627 IPR007527 GO:0008270
Gso18g0164 742 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 66 642 - -
Gso18g0164 742 Pfam MULE transposase domain 322 405 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0164 Gso-Chr18 1413129 1416112 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso18g0164 FAR1 3.3e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0164 - - gmx:100791505 1496.1