Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0160 ATGGCAACAGTTATGGACATGTACAATACTAGTAGCATCATGATACCAGATTTCTTAGACCAGTGTAGTGATCAAGAGCTGATGAAAGCACTTGAGCCTTTTATGAAAAGTGATTCTTCTAGCATTACATACCCTTCATTCTCTTCCTTTTCTTCTTCTCCCAATTTCTCTTCAACAACAAGCTACGAGCAAAAGGTTTCAATAACTCCAAACCATGCTAGTTCCATCAAACTGAACCAACTCACCCCATCACAGATGTTTCAAATTCAAGCCCGAATCCAGGTTCCACGAGGCCAGTTTCTGAGCCCAAAGCCCATTCCCATGAAGCACGTGCGGGCTTCTCCTTCTTCAAAGCCCACGAAGCTTTACCGTGGGGTGAGGCAGAGACACTGGGGCAAGTGGGTCGCTGAGATCAGACTCCCCAAGAACCGAACACGTCTCTGGCTAGGTACATTTGACACCGCAGAGGAAGCAGCGTTGGCTTACGACAACGCAGCGTTTAAGCTAAGAGGAGAAAACGCGAGGCTCAACTTCCCTCACCTGCGTCACCATGGAGCACGCGCGTACGGTGAGTTTGGGAACTACAAGCCTCTCCCCTCTGCGGTCGATGCGAAGCTTCAAGCCATTTGTCAAAGCTTGGGGACCAATTCGCAGAAACTCAAAACTCAAAACCCTATTGTTCTAGATACACACAAGGCAGAGACAGAGACATCGGAGTTTCAGGATTTTAATAAGGTTGAGAATTACCAAACATCATCGTCCTCGGCCTTCTCCGATGAATATTCTTCTTCTTCTTCACCTGAATCCGATATTACCCTCTTGGATTTCTCGGATTCTTGTGAAACAATGGACAATCTTGGGTTGGACTTGGAGAAGTACCCTTCCGTGGAGATTGATTGGGCAGCTTTATCTGACTCATGA 921 0.468 MATVMDMYNTSSIMIPDFLDQCSDQELMKALEPFMKSDSSSITYPSFSSFSSSPNFSSTTSYEQKVSITPNHASSIKLNQLTPSQMFQIQARIQVPRGQFLSPKPIPMKHVRASPSSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGENARLNFPHLRHHGARAYGEFGNYKPLPSAVDAKLQAICQSLGTNSQKLKTQNPIVLDTHKAETETSEFQDFNKVENYQTSSSSAFSDEYSSSSSPESDITLLDFSDSCETMDNLGLDLEKYPSVEIDWAALSDS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0160 306 Gene3D AP2/ERF domain 122 180 IPR036955 GO:0003700|GO:0006355
Gso18g0160 306 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Gso18g0160 306 CDD AP2 121 181 IPR001471 GO:0003700|GO:0006355
Gso18g0160 306 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Gso18g0160 306 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Gso18g0160 306 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Gso18g0160 306 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 302 - -
Gso18g0160 306 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Gso18g0160 306 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 302 - -
Gso18g0160 306 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0160 Gso-Chr18 1378841 1380464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0160 25 304 AP2-EREBP Transcription Factor Family AT4G39780 51.034 1.24e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso18g0160 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0160 K09286 - gmx:106796800 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0160 18 1378841 1380464 Gso13g1463 13 30112212 30113805 GST