Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0159 ATGACGCAGCAGAATGTGGTAGTGTCTGATACTAAATCCGGAGTTTCCTTAACGGTTTTTCCAACAACAACACAAAAGCCACCGGCGGCGCCTGGAGGGTATATTTCCATTCCGAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGGCCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCCTCTCCTACCCATCATAAATCCACACCTTTGTCTCAGGAGCATAACTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGACCAAATTATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGCACGCTGTCTCCTATAGTCGACGACCCTGACCGTGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTCCCTACTGCTATAGTGACCGGCAGATGCAAAGACAAGGTTTACAATTTTGTTCGATTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGACCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATCCTTTGTCAACCTGCCAGTGATTTTCTTCCCTTGATAGATGAGGTGTATCAACAATTAGTTGAAAAGACAAAATCAACTCCTGGAGCTCTGGTTGAGAACAACAAGTTCTGTCTTTCAGTCCATTTTCGTTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAGCTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTAGGTTTGGCCAATTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCGAAAGACACAAGTGCATCTTACTCTTTGCAAGAACCCAACGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCCCTGGGAGCACGTTCCCGAGTGTAA 1098 0.4344 MTQQNVVVSDTKSGVSLTVFPTTTQKPPAAPGGYISIPRRRVLKNLEINGGQRINAWVESMRASSPTHHKSTPLSQEHNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILCQPASDFLPLIDEVYQQLVEKTKSTPGALVENNKFCLSVHFRCVDEKKWSELARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHVSLGARSRV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0159 365 CDD HAD_TPP 105 346 - -
Gso18g0159 365 Pfam Trehalose-phosphatase 107 341 IPR003337 GO:0003824|GO:0005992
Gso18g0159 365 SUPERFAMILY HAD-like 105 354 IPR036412 -
Gso18g0159 365 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 364 - -
Gso18g0159 365 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 364 IPR044651 GO:0004805|GO:0005992
Gso18g0159 365 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 106 317 IPR006379 -
Gso18g0159 365 Gene3D - 204 361 IPR023214 -
Gso18g0159 365 Gene3D - 104 203 IPR023214 -
Gso18g0159 365 TIGRFAM T6PP: trehalose-phosphatase 102 352 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0159 Gso-Chr18 1360646 1363815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0159 95 358 Trehalose Biosynthesis Gene Families AT1G06410 26.316 8.79e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0159 K01087 - gmx:100815357 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0159 18 1360646 1363815 Gso13g1464 13 30133445 30136567 GST