Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0158 ATGGGAGGCAATTCACCAGAGAGGAAACCTGGTTGTGGCTTGATGACAGCAGTATTTGGGCGAAATAATCCATGGTCACGAAAATCAGTCTCTGCAGGTTCTTCTCCCGTAGCCAACAATTTTGAAAAACCACCAAACATTCAAGATTCAAAACGGAGACATAGAGGCTCTAATGATTTTGTTTCAATTAGAGAATCTTCATATAACAATGATGTTACAAACTACTCATCTTGTTATTCTGTCTCCAATCCTCAAAAGCCAACCCATGTTGTAAGCCAAAGGAAGCCACAAAATCGTAATGAAACAATGGGAAGAGGCCCTTCACCTTCACCTACTCAGGGCTATGTCAACCAAGGCAAAAGGGTACCAAAAGAAGCTGTTGGAATCTCTGGTGAACTTGAAAGCATGATCAATGAACACCTAAAGTCCAAAGGAAGTAGTACCCTTGGCAATTTAGGTAACCTTAGGCAAGGAGCAGGACCAAATTACAATGCTTACAGTGAAATGGATTACTGTGTTAGTAATAATGTTGCTAGTGGAGGATACACAAATCAAACCATGGGACGTGAATACGATAAAATTAGTTATGGCAAAGAAGCTAAACCAAGCAAGGAACAATCAGGTTCACTGTGTAGGGCTGTGTCTACTCGAATGGATCCCGAACAATTGAAGATAATGGGCAATGAGGATTACAAGAATGGAAGGTTTGCAGAGGCATTGGCTTTGTATGATGCCGCCATCGCAATTGACCCGAATAAGGCTTCTTATAGGAGCAACAGAAGTGCTGCATTAACTGCTCTTGGTAGGCTTTTGGAGGCTGTTTTTGAATGTAGAGAAGCTATTCGAATTGAGTCTCATTACCAAAGAGCCCATCATCGGTTGGGAAATTTGCACTTAAGATTAGGAGAAACAGATAAAGCTTTGTATCATTATAAACAAGCAGGACCAGATGCTGATCCAGATGAGATTGCTAAAGCAAAGACTCTCCAAGTATATCTAAACAAATGCACCGAGGCTCGTAGGTTCGGTGATTGGATCACACTTATAACCACAACCAACAATGCTATATCATCTGGTGCAGACTCTGCTCCACAAATATATGCATTACAAGCCGAAGCCTTGCTAAAACTTCGTAGACATCAAGATGCAGACAAAGTAATGTCAAGGTGCCCTAAATTTGATGTTGATGAGTGTACCAAGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGTGACACAGGCTCAAGTTGATTTAGTTGCTGGCAGATTTGAAGATGCTTTGGAGGCAGCACAAAAAGCAACTAGGTTGGATTCTAATAGTAAGGAGGCAAATAAGGTGATGAGAAAGGCTCGAGCTGTCACAAGTGCTCGTGCAAAGGGAAATGAGCTTTTCAAGGCATCAAAATTTCATGAGGCTTGCATTGCCTATGGAGAAGGCCTTGATTATGATCCATACAACTCCGTTTTACTATGCAACAGAGCTGCTTGTAGATCAAAACTAGGCCAATTTGATAAAGCAATAGATGATTGCAATACTGCCCTTAACTTACGCCCATCTTACAGCAAGGTCAGGTTGAGAAGAGCCGATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATACAGGACTATGAAATTTTACTAAAAGAGACACCAGAAGATGAGGAAGTAAAGCGAGCATTGCTGGAGGCCCAAGCACAGCTTCAAAAACAGGCAAAGTGA 1725 0.4145 MGGNSPERKPGCGLMTAVFGRNNPWSRKSVSAGSSPVANNFEKPPNIQDSKRRHRGSNDFVSIRESSYNNDVTNYSSCYSVSNPQKPTHVVSQRKPQNRNETMGRGPSPSPTQGYVNQGKRVPKEAVGISGELESMINEHLKSKGSSTLGNLGNLRQGAGPNYNAYSEMDYCVSNNVASGGYTNQTMGREYDKISYGKEAKPSKEQSGSLCRAVSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIESHYQRAHHRLGNLHLRLGETDKALYHYKQAGPDADPDEIAKAKTLQVYLNKCTEARRFGDWITLITTTNNAISSGADSAPQIYALQAEALLKLRRHQDADKVMSRCPKFDVDECTKFFGPIGNANLLVTQAQVDLVAGRFEDALEAAQKATRLDSNSKEANKVMRKARAVTSARAKGNELFKASKFHEACIAYGEGLDYDPYNSVLLCNRAACRSKLGQFDKAIDDCNTALNLRPSYSKVRLRRADCNAKLERWEASIQDYEILLKETPEDEEVKRALLEAQAQLQKQAK* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0158 574 Coils Coil 528 548 - -
Gso18g0158 574 Pfam TPR repeat 227 268 - -
Gso18g0158 574 SMART tpr_5 288 322 IPR019734 GO:0005515
Gso18g0158 574 SMART tpr_5 408 441 IPR019734 GO:0005515
Gso18g0158 574 SMART tpr_5 488 521 IPR019734 GO:0005515
Gso18g0158 574 SMART tpr_5 220 253 IPR019734 GO:0005515
Gso18g0158 574 SMART tpr_5 254 287 IPR019734 GO:0005515
Gso18g0158 574 SMART tpr_5 522 555 IPR019734 GO:0005515
Gso18g0158 574 SMART tpr_5 454 487 IPR019734 GO:0005515
Gso18g0158 574 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Gso18g0158 574 PANTHER OS01G0616333 PROTEIN 5 573 - -
Gso18g0158 574 MobiDBLite consensus disorder prediction 79 117 - -
Gso18g0158 574 Gene3D Tetratricopeptide repeat domain 218 574 IPR011990 GO:0005515
Gso18g0158 574 MobiDBLite consensus disorder prediction 23 57 - -
Gso18g0158 574 Pfam Tetratricopeptide repeat 490 521 IPR001440 GO:0005515
Gso18g0158 574 MobiDBLite consensus disorder prediction 79 121 - -
Gso18g0158 574 Pfam Tetratricopeptide repeat 290 320 IPR019734 GO:0005515
Gso18g0158 574 SUPERFAMILY TPR-like 458 572 IPR011990 GO:0005515
Gso18g0158 574 MobiDBLite consensus disorder prediction 23 45 - -
Gso18g0158 574 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 573 IPR044534 -
Gso18g0158 574 SUPERFAMILY TPR-like 220 443 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0158 Gso-Chr18 1342991 1345868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0158 221 295 U-box Gene Family AT3G07370 34.667 6.99e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0158 - - gmx:100811282 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0158 18 1342991 1345868 Gso13g1466 13 30151808 30154595 GST