Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0146 ATGTCCAATTCTATCTCCGACCCGACCCGAATAATTCACTCTCAGGATCCGAATACCACCGCGGACCCTCAGGTTCCGCTTCGGAACCTTTCCCAGGTTCGGAACAGAATGGATTCTCTACAACACTTCCTATCTCAATCCATCAATACCAACACTCCCCTCACCGTCGATCAAATCGCCATGGTCTCCAGCCAGATCCTCTCCTCCATCCACCAAGTCATCGTCAACGGCGCCGCCCTCGTCTCTTACTCTCAGAATTCCATCGCCGCCGGAGCACCGGATCCACCGCCGTATCCGAAGAAGCCGAAGCCGGAACCTTCAGTTGCCGATAAAGCGAAGCAAACACTCGATTCCAAACTCGAGCCTCTCGAAGGCGACGACAGCGAAATCGTGGAGCTCGACGCCGTCGAAATCCTCGCGGAGCACATGCACTTTTGCGAGATCTGCGGGAAAGGCTTCCGGCGCGACGCGAACCTCCGCATGCACATGCGCGCGCACGGAGAACAGTTCAAGACGGCGGAGGCGCTGGCGAAGCCTTCGGAGAAAGCCTCGTGGCTGCGTGCGACGCGGTTCTCGTGTCCGTTCGTAGGCTGCAACCGGAACAAGCTCCACCGGCGGTTCCGGCCGCTGAAATCGGTGATTTGCGTGAAGAACCACTTCAAGCGAAGCCACTGCCCGAAGATGTACACGTGCGAGCGGTGTCGCAAGAAGCACTTCTCGGTGCTCTCGGATTTGAGGAGCCACTTGAAGCATTGCGGAGGAGAGGCCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCAAGGAAAGACAAGTTGTTTGGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGTGACGAAGAGGGTAAAGGGAAACAAATGGTGGAGGACGACGAAGATCCAATGTTGATGAGTGAAAGTGGATTTGAATTGGATGATTGTTTTTTGGATCAAGAGTTTCCCGAAGGCTTCTTTGATGATTTTGGGTCCATTGATGACTACTGTTAA 1017 0.5546 MSNSISDPTRIIHSQDPNTTADPQVPLRNLSQVRNRMDSLQHFLSQSINTNTPLTVDQIAMVSSQILSSIHQVIVNGAALVSYSQNSIAAGAPDPPPYPKKPKPEPSVADKAKQTLDSKLEPLEGDDSEIVELDAVEILAEHMHFCEICGKGFRRDANLRMHMRAHGEQFKTAEALAKPSEKASWLRATRFSCPFVGCNRNKLHRRFRPLKSVICVKNHFKRSHCPKMYTCERCRKKHFSVLSDLRSHLKHCGGEARWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEGKGKQMVEDDEDPMLMSESGFELDDCFLDQEFPEGFFDDFGSIDDYC* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0146 338 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 14 338 - -
Gso18g0146 338 SUPERFAMILY beta-beta-alpha zinc fingers 141 166 IPR036236 -
Gso18g0146 338 MobiDBLite consensus disorder prediction 1 25 - -
Gso18g0146 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Gso18g0146 338 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Gso18g0146 338 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 14 338 IPR044300 GO:0010044|GO:0010447
Gso18g0146 338 Pfam Zinc finger, C2H2 type 145 166 IPR013087 -
Gso18g0146 338 Gene3D Classic Zinc Finger 227 278 - -
Gso18g0146 338 SUPERFAMILY beta-beta-alpha zinc fingers 239 293 IPR036236 -
Gso18g0146 338 MobiDBLite consensus disorder prediction 90 113 - -
Gso18g0146 338 Gene3D Classic Zinc Finger 143 179 - -
Gso18g0146 338 SMART c2h2final6 191 224 IPR013087 -
Gso18g0146 338 SMART c2h2final6 229 251 IPR013087 -
Gso18g0146 338 SMART c2h2final6 144 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0146 Gso-Chr18 1240419 1241755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0146 129 290 C2H2 Transcription Factor Family AT1G34370 61.446 4.25e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g0146 zf-C2H2 0.00023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0146 - - gmx:100796506 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0146 18 1240419 1241755 Gso13g1477 13 30254686 30256034 GST