Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0143 ATGGCCATTGCACCTTTTGGTAATACATCAGCTACTCAATGGGGAATTCATCCTCAGATTTTCGCGGGATCGACTGGGTTGGGAAAGATTGCATCATCCAGGAACAATGTTACAAGCAGGATAAGGTTTATGGTTGCCCCATGTTCGAGCTTTTTTTCTTGTCATTCCTTGCATGCACTATTTGACAAAGGTTCATCGCAAACTTTGCAACATCGCAGGGGATCGAGGTTAATAGTTAGAGCAGATGCAGATTACTATTCTGTACTCGGGGTGTCAAGAAATTCCAGTAAATCTGAAATTAAGAATGCTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAAGAACCTGATGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAGGTCTTGTCAGATGATGAGAAACGATCCATATATGACACATATGGAGAGGCTGGACTTAAGGGTTCAGGAATGGACATGGGGGATTTCAGCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGTGGCATGGGGGGAAGCAGAGGATCTTGGAATGGAGCAGTTGAGGGCGAGGATGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCCATTTTTGGGGTGGAAAAAGAGATAGAGATTCGGCGATTAGAGAGCTGTGGAACCTGCAATGGTTTGGGGGCTAAACCAGGGACTAAATCATCCAAGTGTAGCACTTGTGGTGGTCAGGGTCGGGTTGTCACGTCGACAAGGACTCCATTAGGCATCTTTCAGCAGTCCATGACATGCTCTTCTTGCAGTGGAACTGGAGAAACTTCAACACCTTGCAGCACATGTGCTGGGGAAGGTCGAGTGAGAAAGACAAAGCGGATAAGTCTCAAGGTTCCTGCTGGTGTGGATTCTGGCAGCCGTTTAAGGGTCCGAAATGAAGGTAATGCTGGAAGGCGTGGGGGTTCTCCCGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCTGACCCCGTGCTTAAGCGAGATGACACAAACATTTTATACACATGCAAGGTGTCTTATATTGATGCAATATTGGGGACAACAATTAAGGTTCCTACTGTGGACGGCATGGTGGATTTAAAAATCCCAGCTGGGACTCAACCAAGCTCAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTGCTGAATAAAAAGAATATGAGGGGTGATCAATTGGTTCGGGTGCAAGTTGAAATCCCCAAAAAACTGAGCAAAGAAGAGAGAAAACTTATTGAGGAACTAGCTGATTTAAGCAAAGGCAAGACTGCTGCCACCAGTAGGAGATAA 1323 0.449 MAIAPFGNTSATQWGIHPQIFAGSTGLGKIASSRNNVTSRIRFMVAPCSSFFSCHSLHALFDKGSSQTLQHRRGSRLIVRADADYYSVLGVSRNSSKSEIKNAYRKLARSYHPDVNKEPDAEQKFKELSNAYEVLSDDEKRSIYDTYGEAGLKGSGMDMGDFSNPFDLFETLFEGMGGMGGSRGSWNGAVEGEDEYYSLVLNFKEAIFGVEKEIEIRRLESCGTCNGLGAKPGTKSSKCSTCGGQGRVVTSTRTPLGIFQQSMTCSSCSGTGETSTPCSTCAGEGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVLEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPLLNKKNMRGDQLVRVQVEIPKKLSKEERKLIEELADLSKGKTAATSRR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0143 440 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 439 - -
Gso18g0143 440 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 289 IPR036410 -
Gso18g0143 440 TIGRFAM DnaJ_bact: chaperone protein DnaJ 84 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gso18g0143 440 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Gso18g0143 440 CDD DnaJ 84 137 IPR001623 -
Gso18g0143 440 PANTHER BNAA01G34580D PROTEIN 34 439 - -
Gso18g0143 440 CDD DnaJ_C 193 415 - -
Gso18g0143 440 Hamap Chaperone protein DnaJ [dnaJ]. 81 435 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gso18g0143 440 Pfam DnaJ central domain 222 285 IPR001305 GO:0031072|GO:0051082
Gso18g0143 440 Gene3D - 332 440 - -
Gso18g0143 440 Pfam DnaJ C terminal domain 197 412 IPR002939 -
Gso18g0143 440 Gene3D - 222 285 - -
Gso18g0143 440 Gene3D - 192 327 - -
Gso18g0143 440 CDD DnaJ_zf 222 285 IPR001305 GO:0031072|GO:0051082
Gso18g0143 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Gso18g0143 440 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Gso18g0143 440 SUPERFAMILY Chaperone J-domain 81 184 IPR036869 -
Gso18g0143 440 ProSiteProfiles Zinc finger CR-type profile. 209 290 IPR001305 GO:0031072|GO:0051082
Gso18g0143 440 Gene3D DnaJ domain 81 184 IPR036869 -
Gso18g0143 440 Pfam DnaJ domain 84 145 IPR001623 -
Gso18g0143 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 345 IPR008971 GO:0006457|GO:0051082
Gso18g0143 440 SMART dnaj_3 83 140 IPR001623 -
Gso18g0143 440 PRINTS DnaJ domain signature 86 104 IPR001623 -
Gso18g0143 440 PRINTS DnaJ domain signature 104 119 IPR001623 -
Gso18g0143 440 PRINTS DnaJ domain signature 120 140 IPR001623 -
Gso18g0143 440 PRINTS DnaJ domain signature 140 159 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0143 Gso-Chr18 1203766 1208127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0143 85 147 C2H2 Transcription Factor Family AT1G74250 44.928 4.06e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0143 K03686 - gmx:100793352 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0143 18 1203766 1208127 Gso13g1480 13 30290098 30294799 GST