Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0130 ATGAAGAGACTTAGCAGCTCAGATTCTTCCAGTGCCCTCATGACAATTTGTCCATCAACAGAGGAACATAGTCCGAGGAACAGCCAACACATGTATGGTAGGGAGTTCCAATCGATGTTGGACGGACTCGACGAGGAAGGGTGTGTTGAAGAACCGGGGTATCAATCTGAGAAGAAGCGTCGTCTAAGTGTGGATCAAGTGAAGGCTTTGGAGAAGAACTTTGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTTGGGTTGCAACCTAGACAGGTAGCCGTATGGTTCCAAAACCGTCGAGCCAGATGGAAAACCAAACAATTGGAGAGAGATTATGGTGTACTCAAAGCCAATTATGATGCTCTTAAGCTTAACTTTGACACCCTCGATCAGGACAACGAAGCCTTACGAAAGCAGGTTAAGGAATTGAAATCGAGGCTGCTGCAAGAAGAGAACACAGGAGGAAGCGGTGTTTCGGTGAAGGAAGAGATAATAACGAGGCCTGCAGACTCAGAAGACAAAACGATGGAACAAAGTAAGAGTGACCCATCTTCTGAAACCTCAAATATTAATCCTAGTTCGGAGTCGGAGGAGGATCACTTGAACTACGAGTGTTTCAACAACAACGACGACTGCGTCGGAGGAACCGCCGCATCGCTCTTGCAAGTGGACTTCAAAGACGGTTCTTCCGACAGCGACGGATCAAGCGCGATTTTGAACGAAGACAACATGTACTCTCCCTTGAAATTCAACAATTGCTCCATATCAACCTCGCCGTCATCGTCTTCGATGATGAACTGTTTTCAGTTCCAGAAACCGTATCATCACCACGCGCAGTACGTGAAGATGGAGGAGCACAATTTCCTCAGCGCGGATGAGGCCTGCAATTTCTTCTCGGATGAACAAGCACCGACCCTTCAATGGTACTGTCCAGAACAGTGGAGCTGA 969 0.4747 MKRLSSSDSSSALMTICPSTEEHSPRNSQHMYGREFQSMLDGLDEEGCVEEPGYQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFDTLDQDNEALRKQVKELKSRLLQEENTGGSGVSVKEEIITRPADSEDKTMEQSKSDPSSETSNINPSSESEEDHLNYECFNNNDDCVGGTAASLLQVDFKDGSSDSDGSSAILNEDNMYSPLKFNNCSISTSPSSSSMMNCFQFQKPYHHHAQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCPEQWS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0130 322 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Gso18g0130 322 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Gso18g0130 322 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Gso18g0130 322 MobiDBLite consensus disorder prediction 188 203 - -
Gso18g0130 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 250 IPR045224 GO:0003700
Gso18g0130 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 253 314 IPR045224 GO:0003700
Gso18g0130 322 MobiDBLite consensus disorder prediction 154 206 - -
Gso18g0130 322 Coils Coil 112 160 - -
Gso18g0130 322 SMART HOX_1 56 117 IPR001356 GO:0003677
Gso18g0130 322 Gene3D - 20 114 - -
Gso18g0130 322 SUPERFAMILY Homeodomain-like 38 115 IPR009057 -
Gso18g0130 322 MobiDBLite consensus disorder prediction 172 187 - -
Gso18g0130 322 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Gso18g0130 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 250 - -
Gso18g0130 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 253 314 - -
Gso18g0130 322 CDD homeodomain 58 114 IPR001356 GO:0003677
Gso18g0130 322 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Gso18g0130 322 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Gso18g0130 322 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0130 Gso-Chr18 1099493 1102104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0130 1 316 Homeobox Transcription Factor Family AT2G22430 48.961 1.51e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso18g0130 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0130 K09338 - gmx:100777924 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0130 18 1099493 1102104 Gso13g1489 13 30395093 30397731 GST
Gso5g1491 5 38343554 38345839 Gso18g0130 18 1099493 1102104 PCT
Gso8g1120 8 10272382 10274649 Gso18g0130 18 1099493 1102104 PCT