Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0129 ATGAAGAAATCCTCCTACCCTAATCCCACCCCTCGCCGCCACGATTTTCACCGTCCGCCACCACCCACCCACGGCTGCGGTTGGGCTCCCCGCCCCGCCTACCACCGCCCCTACCACCAATGGAGGCCCCGATTCCACCCCCACGCCGCCCGCATCGACCGCCCTCCGGAGCCCTATTTCAGGGTGGAGCTCCGCCTCGGCAGCAGCCCCCTCCACCGCGACGACGTCGAGGCCCTGATCGACGAATGCCACTCCCGGCACGACACCTTCACTTTCTACCCCGTCGACGACGTCGCCGCCGTTCTCAGTTACCGGAGCTGGGAGCAGGCGCGAGACGCCGTCGTTTGGTTCTGGGAGGCGCGGCTCGCGGAGAAGCACGATTTCACGCCGACGCTGGATTCCAACGTCGTCGTCGTCAAGGACGATGTGGATTGTCGCCTTCGACCGGTGTTCGCGAGGCACGTGAAAGGGTTGACGGAAGGGAAGGAGGTGAAGCGGTGGATGGAGGAGAGTGAACGGTTGTCGAAAGAAATTTCTCGGCTTTCGAGTTCGCTGAGTAAGCCCTTGCGACTTGGCGTGCACAACGAGTTGGTGGAGAAGAAGAAAGGGCTTGTTGATGAGAAGAATCTTGTTGAAAGGAGGTTGAAGGAGTTTGAGTCTGCGATGCAGTGTTTATTGAAGTATTTGGAGGGTGGTGTTGACGTGGAGGGTGTGACTGTCTTTAGGTTTGATGGAGGTTTTGATTGGAAGCGGATTCATTGTCTGATCAAAAGGGAGTGTCGGAGGCTTGAGGACGGGTTGCCTATTTATGCTTACCGGAGTGATATTCTTCAGGAAATACATTATCAACAGATAATGGTATTAATCGGAGAGACTGGTTCTGGGAAGAGTACGCAGTTGGTACAGTTTCTTGCTGATTCAGGCATTGGTACTGACGAATCCATTGTGTGCACCCAACCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCATTGGATGTTATGAAGGCCAATCAATCAAATGCTGTTCTACATTTTCATCCTCACGTGAGTTTGATTCCAGGATAGCATTCATGACAGATCATTGTTTATTGCAGCACTACATGAGTGATAATAATTTATCCGGGGTCTCGTGCATCATAATTGATGAGGCTCATGAGAGGAGCTTAAATACAGATTTACTGTTGACTTTGTTAAAGAGTTTACTTTGTAGGAGGGTTGAAATGAGACTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTGTCTGATTACTTTTTTGCTTGTGGAATTTTTCGTGTGCTTGGGAGAAGCTTTCCAGTGGATATCAAATATGTTCCTTCTGACTATGCAGGAGATTCTGGTTCTGCTGTTGTTGCCTCATATGTTTCTGATGTTGTCAGAATGGCAACTGAGGTTCACAAAACTGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCTCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTCAAGCTCCCTCTGCAGTAGCTTTGCCCTTGCATGGAAAACTTTCTTCTGATGAGCAATTCCGTGTTTTTCAGAACTACACTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCACTTACGATTCCTGGTGTTAGGTATGTGATAGATTCTGGGCTGGTTAAAGACAGCAGATTTGATCCTGGTAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGACTGTACACGGAAGCTGATTATCAGTCTATGGACCTAAATCAAGAGCCGGAGATTCGGAGAGTTCATCTTGGTGTAGCAGTTCTGAGGATCCTTGCTTTAGGAGTGAAGGATGTGCAAGGTTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCCATAGATATGGCAATCAGAAATCTAATTCAATTAGGAGCCATTGAACTGAACAATGATGTTCATGATTTAACTTCTGAAGGTTGGTGCTTGGTAAGAATGGGAATTGAACCTAGGCTGGGTAAACTTATTCTTGGTTGTTTCAAACATGGTTTGGGTAGGGAAGGTATCATCCTTGCTGCTGTGATGGCCAATGCTAGTAGCATCTTTTGCAGAGTTGGCAATGAATTTGATAAACAAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCTCCGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAGTATCAATGCCAAATCCATGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACATGACGTTGTTACTCCGAGTTACTGGCGTTGGGATCCTTGTATGCCCTCTAATCATGATAAGAATTTGAAAAGGGTAATACTGTTCTCACTTGCTGAGAATGTAGCCATGTACTCCGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCAAGTTGGGTAGTTTTTGGTGAGCTTCTTTCCATTTCCAATCAATATTTGGTCTGTGTGAGTGCATTTGATTTTCAATCATTATACGACCTTTGCCCTGCTCCCCTGTTTGATGTATCCAAAATGGAAGAGCGGAAGTTGCTAATGAAGACACTGTCTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAACTGCAATTTGCTTGCTCTTGTTTCACGTATAAGGAAAGCTTGTATGGATGAACGCATCTTCATCGAAGTGAATGTTGACAATAATGAAATCCACTTATATGCCTCTTCAAATGATATGGATATAGCCCTTGGGTTGGTTAACGATGTTCTAGAATATGAGAGAAAGTGGTTACGCACTGAATGTATGGATAAGTTTTTGTATCATGGTTCTGGTTTCTCTCCACCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGTGTCATCCAAACATAAATGAAATTGATGACAAGGAGCTCTTGATGTTTTTTGAGAAGAATACCTCTGGTTGCATCTGTGCTGTGCACAAATTCACAGGCAATACGAGGGATGAAGATAGGGATAAGTGGGGCAGGATAACATTTATGTCCCCAGATATTGTCAGAAGAGCTGCTGAGCTAGATGGACGGGAGTTTTGTGGCTCATCCTTAAAAGTTGTTCCTTCACAGTTGGGAGGGGATAAAACATTTTCGTTCCCTGCTGTTAAAGCAAGAATTTCTTGGCCTCGTAGGCTTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAGGACGTTGATTATATCTTGAGAGATTTCTATAACCTTGCAGTAGGAGGGAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTTATAAATGGGCTTGACAAAGAGCTTTCGGAAGCTGAAATATCAGATGTGCTAAGAACTGCTACAACTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGAAGCAGTTGGAAATCCACCATGCAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTACCCCTTTTTGCCCAAAAGGAACCCTCACATTAGTCCTTGCCGAGTTCAGGTGTTTGCACCTGAGCCCAAGGATGCTTTCATGAGAGCTTTAATCACTTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAAAGGTGTTACCTGGATGTCTTTCATGGCAAAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCCTTACATTTCCTACTCCAGTGTATCGTGTGATTAAGGAACAACTGGATGAAGTACTTGCAAGCTTCAGGAATTTGAAAGGTCTTGAATGCAACCTGGACAGGACATTTAATGGTTCTCACCGAGTGAAGATAACAGCGAACGCCACAAGGACAGTGGCAGAAGTTAGAAGACCTCTGGAAGAACTATTGAGAGGGAAAACCATTGAGCATGACAGCCTCACCCCTGCAGTTCTCCAACTCATGTTGTCCAGAGATGGCTTTAGTCTTAAAAACTCATTGCAGCAAGAGACTGGAACTTATATTCTTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCCCCAAACATGGTTGCTTTGGCTCAGGAGAAGGTGATACAGTCCCTCCTTTCTCTCCATGAAGAAAAGCAGTTAGAAATTCATCTGAGAGGGAGGGATCTACCTCCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTCCATGGATTGAAAGAGAGGGTACCTGGGGTAGATCTTACACTGAACATACGTCGCCACATAATCATTCTTCATGGTAGCAAGGAGTTGAAACCGAGAGTAGAGGAAATAGTTTTTGAGATTGCTCGTTCAAGCCATCATTTGGTTGAGAGATTTGGCAATGGACCCAGTTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGATACCGGCTTGAAGGCTGTGGCCATTTGTTCTGCCGGATGTGTTTGGTTGAGCAATTTGAATCTGCTATTAAAAACCAAGGCACTTTCCCGGTATGTTGTACTCACAGGGACTGTGGAGATCCCATCCTGCTTACAGATTTGAGATCTCTTTTATTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCAACAAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGTCTGCTGGCGAGCCATTTGTTTGTAGGGCTTGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGTGAGAGATACAAAGAATTCAAGGAAGATCCGGATTCATCTCTGATAGAATGGTGCAGAGGGAAAGAACAAGTTAAGTGCTGCTCGGCATGTGGATATGTAATTGAGAAGGTAGATGGGTGCAACCACGTTGAATGCAAGTGCGGAAAGCATGTCTGCTGGGTTTGTTTAGAGTTCTTTAGTACTAGTAATGACTGTTATGACCATTTAAGAACTATACACTTAACCATATAA 5190 0.4484 MKKSSYPNPTPRRHDFHRPPPPTHGCGWAPRPAYHRPYHQWRPRFHPHAARIDRPPEPYFRVELRLGSSPLHRDDVEALIDECHSRHDTFTFYPVDDVAAVLSYRSWEQARDAVVWFWEARLAEKHDFTPTLDSNVVVVKDDVDCRLRPVFARHVKGLTEGKEVKRWMEESERLSKEISRLSSSLSKPLRLGVHNELVEKKKGLVDEKNLVERRLKEFESAMQCLLKYLEGGVDVEGVTVFRFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRSDILQEIHYQQIMVLIGETGSGKSTQLVQFLADSGIGTDESIVCTQPRKIAAKSVAQRVQEESIGCYEGQSIKCCSTFSSSREFDSRIAFMTDHCLLQHYMSDNNLSGVSCIIIDEAHERSLNTDLLLTLLKSLLCRRVEMRLIIMSATADAKQLSDYFFACGIFRVLGRSFPVDIKYVPSDYAGDSGSAVVASYVSDVVRMATEVHKTEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSSDEQFRVFQNYTGKRKVIFSTNLAETSLTIPGVRYVIDSGLVKDSRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYTEADYQSMDLNQEPEIRRVHLGVAVLRILALGVKDVQGFDFVDAPSPSSIDMAIRNLIQLGAIELNNDVHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIILAAVMANASSIFCRVGNEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSMRRCQDTILELETCLEREHDVVTPSYWRWDPCMPSNHDKNLKRVILFSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSAFDFQSLYDLCPAPLFDVSKMEERKLLMKTLSGLGCILLKRFCGKANCNLLALVSRIRKACMDERIFIEVNVDNNEIHLYASSNDMDIALGLVNDVLEYERKWLRTECMDKFLYHGSGFSPPVALFGSGAEIKHLELEKRSLSVDVCHPNINEIDDKELLMFFEKNTSGCICAVHKFTGNTRDEDRDKWGRITFMSPDIVRRAAELDGREFCGSSLKVVPSQLGGDKTFSFPAVKARISWPRRLSRGFAIVKCDIKDVDYILRDFYNLAVGGRYVRCEVGKKSMDSVVINGLDKELSEAEISDVLRTATTRRILDFFLVRGEAVGNPPCSALEEALLKEIYPFLPKRNPHISPCRVQVFAPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPTPVYRVIKEQLDEVLASFRNLKGLECNLDRTFNGSHRVKITANATRTVAEVRRPLEELLRGKTIEHDSLTPAVLQLMLSRDGFSLKNSLQQETGTYILFDRHNLNLRVFGSPNMVALAQEKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQMIKNFGPDLHGLKERVPGVDLTLNIRRHIIILHGSKELKPRVEEIVFEIARSSHHLVERFGNGPSCPICLCEVEDGYRLEGCGHLFCRMCLVEQFESAIKNQGTFPVCCTHRDCGDPILLTDLRSLLFGDKLEDLFRASLGAFVATSGGTYRFCPSPDCPSIYRVADPGSAGEPFVCRACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLIEWCRGKEQVKCCSACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSTSNDCYDHLRTIHLTI* 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0129 1729 ProSiteProfiles TRIAD supradomain profile. 1517 1725 IPR044066 -
Gso18g0129 1729 Pfam Helicase associated domain (HA2) 658 752 IPR007502 GO:0004386
Gso18g0129 1729 ProSitePatterns Zinc finger C2H2 type domain signature. 1705 1726 IPR013087 -
Gso18g0129 1729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 441 IPR014001 -
Gso18g0129 1729 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 99 1481 - -
Gso18g0129 1729 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1552 1646 - -
Gso18g0129 1729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 819 IPR027417 -
Gso18g0129 1729 PANTHER ATP-DEPENDENT RNA HELICASE 99 1481 - -
Gso18g0129 1729 PANTHER ATP-DEPENDENT RNA HELICASE 1552 1646 - -
Gso18g0129 1729 ProSitePatterns Zinc finger RING-type signature. 1537 1546 IPR017907 -
Gso18g0129 1729 CDD DEXHc_RHA-like 284 440 - -
Gso18g0129 1729 CDD SF2_C_RHA 445 605 - -
Gso18g0129 1729 Coils Coil 164 184 - -
Gso18g0129 1729 SMART ha2_5 657 753 IPR007502 GO:0004386
Gso18g0129 1729 SMART ibrneu5 1654 1718 IPR002867 -
Gso18g0129 1729 SMART ibrneu5 1585 1653 IPR002867 -
Gso18g0129 1729 Coils Coil 201 221 - -
Gso18g0129 1729 MobiDBLite consensus disorder prediction 1 22 - -
Gso18g0129 1729 SUPERFAMILY RING/U-box 1675 1723 - -
Gso18g0129 1729 SUPERFAMILY RING/U-box 1520 1580 - -
Gso18g0129 1729 Pfam IBR domain, a half RING-finger domain 1600 1653 IPR002867 -
Gso18g0129 1729 Pfam DEAD/DEAH box helicase 275 428 IPR011545 GO:0003676|GO:0005524
Gso18g0129 1729 Gene3D - 619 662 IPR042035 -
Gso18g0129 1729 Gene3D - 1649 1726 - -
Gso18g0129 1729 Gene3D - 254 443 IPR027417 -
Gso18g0129 1729 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 821 900 IPR011709 -
Gso18g0129 1729 Gene3D - 444 616 IPR027417 -
Gso18g0129 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1518 1596 IPR013083 -
Gso18g0129 1729 Pfam Helicase conserved C-terminal domain 480 596 IPR001650 -
Gso18g0129 1729 ProSiteProfiles Zinc finger RING-type profile. 1521 1563 IPR001841 -
Gso18g0129 1729 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 383 392 IPR002464 -
Gso18g0129 1729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 637 IPR001650 -
Gso18g0129 1729 SMART ultradead3 265 450 IPR014001 -
Gso18g0129 1729 SMART ring_2 1521 1563 IPR001841 -
Gso18g0129 1729 SMART helicmild6 499 597 IPR001650 -
Gso18g0129 1729 SUPERFAMILY RING/U-box 1604 1659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0129 Gso-Chr18 1071629 1078299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0129 1533 1708 ARIADNE family AT3G27710 30.726 3.84e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0129 K12818 - gmx:100810008 3482.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0129 18 1071629 1078299 Gso13g1490 13 30414689 30421378 GST