Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0127 ATGAGAAGGAGAACCAATTATAGTCCAATACCTTCGCCTCTTCACCAACCAGTCCCACTTTCAATTCCGTGGGTTCCTGCCATCAATGATAGAGATCACATGTATCTAAACCTTGCACCTATCATTATAATTGTCATAGCTGGCACAACTTGCATAATTTTTTTTCTCATCACCTTGTTCAAAATCCTAAGGTACTATTATCCAAATAGATACAACGTTAGCAGAAGTAACCCACCAATATTATTTGACATTCGTGGAGATTCTCCCTTTTCTGATGATGAGGAACATGATCAAGCCATTAGGCACCCCATATGGTTCATCCCCACAGAGGGTCTCCAACAATCAATCATAGACTCCATCACAGTCTACAAATACAGAAAAGATGAAGGGTTGGTTAAAGAAACTGAGTGTCTTGTTTGCCTTGGTGAGTTTCAACAAGAAGAGAGTCTCAGAGTATTGCCAAAGTGTAACCACGCTTTTCACATCCCTTGCATTGATACTTGGTTGAGATCTCATAAAAGTTGTCCCTTGTGCCGTGCACCTATTGTTCTTGATGTTGCTAGTGTTGGTGGTGGCACCGAGTCTGACTCAAATGTTTCTGATATGAACGAATACGTAGAAGAAAGTAATAGTGGTGGAGTGAGGGTTGGAGATGAAGAAAATTCTAGTGAAGAGGGGAGGGATGATGGAATTCATGTTTTGAATGAATGTGTCGAGGTGAGTGGCCATTCTACAATTCTAATTGGTTCTGCTTCTGATGTTAGTGCACAAGAATTTGATGATGAAATTGAACTCAAAATGAAGAGATCTGTCTCGGTGGATTCATCTTCTGCTTCAATAGTATTTAGTGATGTGTTGGAATTAAATTTTGATATAGAAAGCTTAGACACCAACACCAACTTGGTGGTTGAAAAGGTTTCAATTTCAAGTAACAAGGATGTTGCTATTGCTAAGGAGGGTAGCGAAAGTTCAACCAATAACAAACTGGCTTCAGTTGGGCATGCAATGCAAGAGAGGCATTGCTCATTGAGGTTCTCTTCACATAACACAAAATTCTTATTTTCCAAGCGTAGCAGGAGCCAGAGTTTAACTCTTCCATTGTGA 1104 0.3995 MRRRTNYSPIPSPLHQPVPLSIPWVPAINDRDHMYLNLAPIIIIVIAGTTCIIFFLITLFKILRYYYPNRYNVSRSNPPILFDIRGDSPFSDDEEHDQAIRHPIWFIPTEGLQQSIIDSITVYKYRKDEGLVKETECLVCLGEFQQEESLRVLPKCNHAFHIPCIDTWLRSHKSCPLCRAPIVLDVASVGGGTESDSNVSDMNEYVEESNSGGVRVGDEENSSEEGRDDGIHVLNECVEVSGHSTILIGSASDVSAQEFDDEIELKMKRSVSVDSSSASIVFSDVLELNFDIESLDTNTNLVVEKVSISSNKDVAIAKEGSESSTNNKLASVGHAMQERHCSLRFSSHNTKFLFSKRSRSQSLTLPL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0127 367 CDD mRING-H2-C3H2C2D_ZSWM2 136 179 - -
Gso18g0127 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 185 IPR013083 -
Gso18g0127 367 SMART ring_2 137 178 IPR001841 -
Gso18g0127 367 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Gso18g0127 367 PANTHER RING-H2 FINGER PROTEIN ATL54 13 358 - -
Gso18g0127 367 SUPERFAMILY RING/U-box 120 185 - -
Gso18g0127 367 Pfam Ring finger domain 136 179 IPR001841 -
Gso18g0127 367 MobiDBLite consensus disorder prediction 207 227 - -
Gso18g0127 367 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 358 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0127 Gso-Chr18 1066425 1067528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0127 38 246 C3H Transcription Factor Family AT1G72220 34.322 1.52e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0127 - - gmx:102667611 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0127 18 1066425 1067528 Gso13g1492 13 30423901 30432307 GST
Gso5g1489 5 38305345 38307062 Gso18g0127 18 1066425 1067528 PCT