Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0125 ATGAAGGTGAGCCAATATATGCTCCTGGTGGTCCTAGTTTGGCATTCTTCATTATGTGCGAATGCACAGTGGAATAACCCAATAAACTACTCTCCATTCGACGAGACAAACAAAGGTGGAAACTACTCCAAGGTCACATGGAGTGTGTCGCTGTCATGTGTCTTCGTTAGCATCCTGGTGTTTATTTTGTTTAAGCTCCGCGCGTGTTGTTGTTGTTGTTATTCTTCTTCTTCTTCCCAACGCCATAACACAAAGCTCGTGGCAGCCACAGAAGCTATTGAAAAGTGCCCCATCTTTGAATACTCGACGGCGAAGGAGCTTAAAGTGGGGAATGGGGCAGAGGAGTGCTCGGTGTGCTTGGTCGAGTTCGAAGACTCCGACACCATAAAGATGCTCCCAAAATGCCAACACGTTTTCCACCAGAATTGCATCGATACATGGTTACCCTCTCGCATGACCTGTCCCATTTGTCGCCAGAAACTCACGTCTCAGGATACCGTAATCGACATTGATGATGATGATGTCGTCCCAATGGAACAACTAGAACATGATATTGGTACAGAGATTACAGAGTCAGAGGTGGCAGTAACTGATGAAACTGACACTGGCACTGTTGTGGAACAGGTTTTGGTTTGA 636 0.4623 MKVSQYMLLVVLVWHSSLCANAQWNNPINYSPFDETNKGGNYSKVTWSVSLSCVFVSILVFILFKLRACCCCCYSSSSSQRHNTKLVAATEAIEKCPIFEYSTAKELKVGNGAEECSVCLVEFEDSDTIKMLPKCQHVFHQNCIDTWLPSRMTCPICRQKLTSQDTVIDIDDDDVVPMEQLEHDIGTEITESEVAVTDETDTGTVVEQVLV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0125 211 PANTHER RING FINGER DOMAIN-CONTAINING 8 191 - -
Gso18g0125 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 8 191 - -
Gso18g0125 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 167 IPR013083 -
Gso18g0125 211 SUPERFAMILY RING/U-box 112 161 - -
Gso18g0125 211 Pfam Ring finger domain 115 158 IPR001841 -
Gso18g0125 211 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Gso18g0125 211 CDD RING-H2_PA-TM-RING 115 158 - -
Gso18g0125 211 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0125 Gso-Chr18 1047981 1048616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0125 1 164 Rapid Response to Elicitors AT3G05200 32.955 1.43e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0125 K10664 - gmx:102667227 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0125 18 1047981 1048616 Gso13g1494 13 30444336 30445013 GST