Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0120 ATGGGTCTCTCAAATTTCCCAAGTGCATCTGAAGGGGTGCTACCTGTGCTTGTGATAAACACGGTTCTCTCAGTGGCAGTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTAGTACTTGGTGGCAGTGCTGCTGCTAATGGTTCAAACATTGAACATGATGAAAGTTCATCATCATCATGGGAAAGGAGGGTGTCAATAACTCAGTACAAGTCATTGTGCCACAGCCACGACATAGGAGGAACAAGTATGGCTATGGTGGAGTGCTGCGTTTGTTTGTGTCGTTTTGAAGCCAATCAAGAGGTCAGTGAGTTGCCTTGCAAGCATTACTTCCACAGAGGTTGCTTGGACAAATGGTTTGATAACAAACACACCACTTGTCCCTTGTGCCGTTCCATCGACTAG 405 0.4568 MGLSNFPSASEGVLPVLVINTVLSVAVLKNMFRSMLQVVLGGSAAANGSNIEHDESSSSSWERRVSITQYKSLCHSHDIGGTSMAMVECCVCLCRFEANQEVSELPCKHYFHRGCLDKWFDNKHTTCPLCRSID* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0120 134 SMART ring_2 89 130 IPR001841 -
Gso18g0120 134 Pfam Ring finger domain 88 131 IPR001841 -
Gso18g0120 134 PANTHER - 1 133 IPR044249 -
Gso18g0120 134 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Gso18g0120 134 SMART ringv_2 88 131 IPR011016 GO:0008270
Gso18g0120 134 CDD RING-H2_PA-TM-RING 88 131 - -
Gso18g0120 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 134 IPR013083 -
Gso18g0120 134 SUPERFAMILY RING/U-box 88 132 - -
Gso18g0120 134 PANTHER F21J9.24-RELATED 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0120 Gso-Chr18 1006022 1006781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0120 1 132 C3H Transcription Factor Family AT2G04240 32.450 3.20e-23 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0120 K16285 - gmx:100811790 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0120 18 1006022 1006781 Gso13g1500 13 30479046 30479896 GST