Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0115 ATGTATGCGTTAAGATACAATAAGGAATGTCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTCCTCAGACTCCACGAGGCTCCATCAGAACCTATTATTCAAGTCAACCCACCAAAGATTTTCTCTTCAAGAGGGACAAGTTGGCCTTCTTTGACAAGGAGTGTTCCAGAATTGCTGAGCACATATACTTGGGGAGTGACACAGTAGCCAAGAACCATGAACTCCTCAGGCAGAATGGAATCACACACATGCTCAACTGTGTTGGGTTTGTTTGTCCCGAGTATTTCAAAGGTGATTTTGTGTACAAGACACTGTGGTTGCAGGACAGCCCCACGGAGGACATCACAAGCATTCTCTATGATGTGTTTGATTACTTTGAGGATGTCAGAGAGCAAGGTGGGCGTGTCCTTGTTCATTGCTGCCAAGGGGTTTCTCGATCAACGGCTTTGGTGATTGCTTACCTCATGTGGAGGGAGGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGCTGTGACCAACCCGAACATGGGTTTTGCTTGTCAACTTTTGCAGTGCCAGAAAAGGATCCATGCTATGCCTACAAGTCCAAATTCTGTTCACAAGATGTATCGGATGGCTCCTCACTCCCCCTATGACCCTCTTCATCTGGTCCCCAAGATGGTTAACCAGCCAGGTGCACGAGCCCTTGATTCTCGTGGGGGCTTCATTATTCATATTCCTTCTGCTATCTATGTTTGGAATGGGAAACATTGTAACTCTGTGATGTCTTGCAATGCAAGGACTGCAGCCTTTCAGATGATACGTTATGAGGGTGCAAAGGGTCCTATTTTGACCATCCATGAAGGTGAAGAACCTCCTGGGTTTTGGATTGCTCTTTCAGGTGATTCTGACAAAGAAGAAGAGGTCATGGTCATGGAGGAACCCTCTGAAGGCATGGAAAGTGCTGAGCTGGTTGATTCGGGGACTACTGGTCCAAGAAAAGTTGATGCATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCCTTGTCTGATACAGGATTAGAAACTTGTCTTCCTGCTAGAGAACAAGGTTGGGCAAGACTGAGGAGGAAGTTTGCTAGTGGATTGCTCACATCCCCCAAATTGAACTGTGATGCTGATTCAGACCCATGCAATGATCATCAACCCAGTGTAGATGTGGAGGTTGAAAAACAAGATTCTGCAGATGAGCCTTTGTCACCATCATCAATTCCTCCCTGTGGTTCACCGGATTCCTTTGAATGCTATCCAAATAGGGAAAAAGGTAGTCCTGAAGCCATGGACTTCTCTGTTCATGGTGTTGCTTCATCATTGCCACTGTCTCCTCCTGGCACATCAAATCCTTTTCCTTGTTTTATAAGTTGCAGTCCAAAATTCAATTCCAAGTCACCAACACTTTCACCTTCAAGTTCTGATTATGCCAGTTCATTTACTTTTTCACCTTCCTCTACCAACTGGTCCGACTTGTCATTTTTGTCTCCTCGGCAGCCATTGTCATCCGGCCTTGAATCAGCTGAACCATTTAATGTTAAAGACTCGTCTTTCTCAAAAAATTCCTCTTTACTTCACAAAGAAGATGTCCCTTCACCCTTGGAGGAATTTTCAGCTAATCACACATTTGGAGGGGTGAACTCCAATTTGCCAATGAAAGGTTCTTTCCTCTCAATTGCAGAGTGCAGAGGGAGTCATCCACCGTCTCTTATGTTGCCACCCTCTGCCAGTGAATCCTCTCACGTCCCCAAGAACAACCTGGAGGACTGCAACTAA 1836 0.4553 MYALRYNKECPSAGSDDLGVWPLPQTPRGSIRTYYSSQPTKDFLFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHMLNCVGFVCPEYFKGDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRIHAMPTSPNSVHKMYRMAPHSPYDPLHLVPKMVNQPGARALDSRGGFIIHIPSAIYVWNGKHCNSVMSCNARTAAFQMIRYEGAKGPILTIHEGEEPPGFWIALSGDSDKEEEVMVMEEPSEGMESAELVDSGTTGPRKVDAYDLDFEIFHKALAGGVVPPFSLSDTGLETCLPAREQGWARLRRKFASGLLTSPKLNCDADSDPCNDHQPSVDVEVEKQDSADEPLSPSSIPPCGSPDSFECYPNREKGSPEAMDFSVHGVASSLPLSPPGTSNPFPCFISCSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFLSPRQPLSSGLESAEPFNVKDSSFSKNSSLLHKEDVPSPLEEFSANHTFGGVNSNLPMKGSFLSIAECRGSHPPSLMLPPSASESSHVPKNNLEDCN* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0115 611 MobiDBLite consensus disorder prediction 402 418 - -
Gso18g0115 611 CDD DSP 57 191 - -
Gso18g0115 611 ProSiteProfiles Dual specificity protein phosphatase domain profile. 56 198 IPR020422 GO:0006470|GO:0008138
Gso18g0115 611 MobiDBLite consensus disorder prediction 592 611 - -
Gso18g0115 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 140 150 IPR016130 GO:0016311|GO:0016791
Gso18g0115 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 199 IPR029021 -
Gso18g0115 611 MobiDBLite consensus disorder prediction 523 545 - -
Gso18g0115 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 115 176 IPR000387 GO:0016311|GO:0016791
Gso18g0115 611 Gene3D Protein tyrosine phosphatase superfamily 36 198 IPR029021 -
Gso18g0115 611 Pfam Dual specificity phosphatase, catalytic domain 64 194 IPR000340 GO:0008138|GO:0016311
Gso18g0115 611 SMART dsp_5 56 195 IPR020422 GO:0006470|GO:0008138
Gso18g0115 611 PANTHER MKPA PROTEIN 5 558 - -
Gso18g0115 611 SUPERFAMILY Actin depolymerizing proteins 201 302 - -
Gso18g0115 611 MobiDBLite consensus disorder prediction 587 611 - -
Gso18g0115 611 Gene3D Severin 219 307 IPR029006 -
Gso18g0115 611 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 5 558 - -
Gso18g0115 611 MobiDBLite consensus disorder prediction 393 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0115 Gso-Chr18 964772 967923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0115 55 198 Protein tyrosine phosphatase (PTP) family AT3G06110 36.111 1.18e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0115 - - gmx:100775448 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0115 18 964772 967923 Gso13g1505 13 30517902 30521707 GST
Gso5g1477 5 38210660 38213360 Gso18g0115 18 964772 967923 PCT
Gso8g1105 8 10148441 10151229 Gso18g0115 18 964772 967923 PCT