Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0107 ATGGAAATTCCAATTCCAATTCCACTCTCATCTATGTTACTCTTTCTACTTCTTGTACCTTGCTGCATTTGCTCTTCCCCACTTCAAGATCCTGAACTAGTGGTCGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTTTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGATGTGACCCCAATTGGGAAAAGAACCGGAAGCGTCTGGCAGATTGTTCCATTGGGTTTGGTAAACATGCTGTTGGAGGAAGGGATGGAAAACTATATGTGGTGACTGACCCTGGTGATCACCCTGTGAACCCCAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAGCCATTGTGGATCATATTCAAACGTGACATGGTGATCAAGCTCAAGCAAGAGCTAATGATGAATTCTTTCAAGACTATTGATGGTAGAGGAGTAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAATATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAGCAAGGAGGGAATGCCTATGTGAGGGACTCTCCTACACACTATGGGTGGAGGACTCTCTCGGATGGTGATGGAGTGTCAATCTTTGGTGGGAGTCATGTTTGGGTGGACCACTGCTCTCTCTCCAATTGCCGTGATGGACTAATTGATGCCATCCATGGATCCACGGCCATCACCATATCCAACAATTACATGACCCACCATAACAAGGTTATGCTTTTGGGTCACAGTGACACTTTCACTAGGGACAAGAACATGCAAGTTACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTCCATGTGGTGAACAATGACTACACCCATTGGAGAATGTATGCCATAGGGGGGAGTGCTGCCCCAACTATCAATAGCCAAGGGAATAGATTTCTTGCTCCCAATGACAATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCACCACAGAGCAAGTGGAAGAATTGGAATTGGAGGTCAAATGGAGATTTGATGTTAAACGGTGCGTTTTTTACGGCATCTGGAGCAGGCGCATCTTCAAGTTATGCAAGAGCATCCAGTTTGGCAGCAAAATCATCTTCACTTGTGAGTTCTATAACAGCATCAGCTGGATCACTTAGATGCAGAAAGGGTTCACGCTGCTGA 1218 0.4524 MEIPIPIPLSSMLLFLLLVPCCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCSIGFGKHAVGGRDGKLYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKRENSPQSKWKNWNWRSNGDLMLNGAFFTASGAGASSSYARASSLAAKSSSLVSSITASAGSLRCRKGSRC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0107 405 Pfam Pectate lyase 140 322 IPR002022 -
Gso18g0107 405 SUPERFAMILY Pectin lyase-like 42 399 IPR011050 -
Gso18g0107 405 PANTHER PECTATE LYASE 13 402 - -
Gso18g0107 405 SMART amb_all 131 328 IPR002022 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Gso18g0107 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Gso18g0107 405 Gene3D - 57 398 IPR012334 -
Gso18g0107 405 PANTHER PECTATE LYASE 18-RELATED 13 402 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0107 Gso-Chr18 878198 880562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0107 10 405 Polysaccharide Lyase AT5G63180 77.396 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0107 K01728 - gmx:100782388 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0107 18 878198 880562 Gso13g1516 13 30613573 30615925 GST