Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0101 ATGAAAATGGAGGGGCTTGATTTGTTCCTAGTAGCAACGAATACCATAGGCTTCATTTGTGTGTGCAGTGCCCTTATCAAATTTCTCAAGTGGGTATGGGTGGTGTTCTTGAGGCCACCAAAGAATCTCAAAGAGTATGGTTCATGGGCCATAATCACTGGCTCCACTGATGGAATTGGCAAGGCCATGGCTTTTGAATTGGCATCTAAGGGACTTAACCTTCTCTTGGTTGGTAGAAACCCTCTAAAACTTGAGGCAACATCCAAGGAAATAAGAGATAGACTTGATGTTGAGGTTAAGTTTGTGGTCATAGACATGCAAAAAGTTGAGGGAGTTGAAATAGTAAAAAAAGTAGAGGAAGCAATAGATGGATTGGATATAGGTTTGCTAGTTAATGGTGCAGGCTTGGCTTACCCTTATGCTAGATTCTTTCATGAGGTTGATTTGGAGCTTATGGATGCTATTATAAAAGTAAACTTGGAGGGAGCAACTTGGATCACAAAGGCAGTGCTTCCCACTATGATCAAGAAGAAAAAGGGAGCAATAGTGAACATTGGCTCTGGTTCCACTGTTGTGCTTCCTTCATATCCTCTAGTCACCCTCTATGCTGCTACAAAAGCATACCTTGCAATGTTCTCGAGATGCATCAGTTTGGAATACAAGCATCAAGGAATTGACATCCAATGTCAGGTTCCATTATTTGTATCAACAAAGATGACCAAAATGAAGACATCAATTTTTGTTCCAACGCCGGCTATGTATAGTAAAACATGCACAAGATGGATTGGATACGAAAAACTGGTTGAGCCATACTTCCTCCATTCTGTGCAGGGGTTTCTCATAAGGGCAATTCCTGATTCATTAGTGGATTCCTATATGCTGCGCTATTTTCTTTATTGGCGTGGAAGAGGACTCTCCAAGGACTCCAACATTAAAACATCAGCAGCATCTAATTCTGAAGAAGCAAACATCATTAATCAAGATCATACAAATTAA 996 0.4056 MKMEGLDLFLVATNTIGFICVCSALIKFLKWVWVVFLRPPKNLKEYGSWAIITGSTDGIGKAMAFELASKGLNLLLVGRNPLKLEATSKEIRDRLDVEVKFVVIDMQKVEGVEIVKKVEEAIDGLDIGLLVNGAGLAYPYARFFHEVDLELMDAIIKVNLEGATWITKAVLPTMIKKKKGAIVNIGSGSTVVLPSYPLVTLYAATKAYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMKTSIFVPTPAMYSKTCTRWIGYEKLVEPYFLHSVQGFLIRAIPDSLVDSYMLRYFLYWRGRGLSKDSNIKTSAASNSEEANIINQDHTN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0101 331 Pfam short chain dehydrogenase 49 243 IPR002347 -
Gso18g0101 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 300 IPR036291 -
Gso18g0101 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Gso18g0101 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Gso18g0101 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Gso18g0101 331 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 6 310 - -
Gso18g0101 331 CDD 17beta-HSD1_like_SDR_c 47 285 - -
Gso18g0101 331 PIRSF 11-beta-HSD1 1 307 - -
Gso18g0101 331 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 189 217 IPR020904 GO:0016491
Gso18g0101 331 Gene3D - 43 263 - -
Gso18g0101 331 PANTHER RH59310P 6 310 - -
Gso18g0101 331 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Gso18g0101 331 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Gso18g0101 331 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Gso18g0101 331 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Gso18g0101 331 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0101 Gso-Chr18 827573 834902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0101 16 309 Lipid Metabolism Gene Families AT1G67730 49.324 2.70e-107 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0101 K10251 - gmx:100816067 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0101 18 827573 834902 Gso13g1521 13 30658844 30661485 GST
Gso5g1432 5 37792474 37795938 Gso18g0101 18 827573 834902 PCT
Gso8g1055 8 9761208 9764196 Gso18g0101 18 827573 834902 PCT