Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0095 ATGTGGCAAAATCAGCCCAGCAATTCGTCTTTCAGTGATTCTGTCAAGGCTCTCCAAGATGATATACAACATGCTAATACCCTGGCATCAGCACTTCCTCGAGATTATGATGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCTCCTATTTTTTTGTTCTTGAGTGAATGGTTGGATTTTAGTTGTACAGACACTTTGCCCATGTATTTGGGCTTACTCCACATACTTATTTTCAATGTATACGCTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTCATATACCCTTCATTAAGGTTACTTCAAGGCGAGTTTAATAATGATCAAAGAAACAGTTGTGTAGAAGTGAGCAGAAAGAGGCTTGCAAAGGTTCTCAATAAAGATCTAGAGGGAGATGAAGAATGTGGCATATGCATGGAAAACGGCATGAAGATGGTTCTGCCTAATTGTGGACACTCTTTGTGCATTAGCTGCTTCCATGATTGGTATATGAGATCAGAATCATGCCCATTTTGCCGTGGAAGCCTGAAGAGGATCAGTCCTAAAGATTTATGGGTGGTAATTGGCAACAGTGATGTGGTTGACAGGATTACCATTGCAAAGGAGAATTTAAGACGTCTCTACCATTACATTGAAACTCTGCCTTCAATTATATCGGATGCACATGCATATACATTCAATCACATGCTATAA 732 0.3907 MWQNQPSNSSFSDSVKALQDDIQHANTLASALPRDYDGNYFQMKLSYSPFAPIFLFLSEWLDFSCTDTLPMYLGLLHILIFNVYADGMPSISSKERKATIKEFYAVIYPSLRLLQGEFNNDQRNSCVEVSRKRLAKVLNKDLEGDEECGICMENGMKMVLPNCGHSLCISCFHDWYMRSESCPFCRGSLKRISPKDLWVVIGNSDVVDRITIAKENLRRLYHYIETLPSIISDAHAYTFNHML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0095 243 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Gso18g0095 243 PANTHER RING FINGER PROTEIN 41, 151 4 243 - -
Gso18g0095 243 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 4 243 - -
Gso18g0095 243 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Gso18g0095 243 SUPERFAMILY RING/U-box 136 191 - -
Gso18g0095 243 SMART ring_2 148 185 IPR001841 -
Gso18g0095 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0095 Gso-Chr18 787146 789996 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0095 112 225 C3H Transcription Factor Family AT2G20030 31.250 9.61e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0095 - - gmx:100805014 504.597