Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0094 ATGGATAATGGTTGTTTCTCTTCCCCAAAGCGTGATTTTCCTGCTGGTCTGAGAGTTCTGGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTAAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAGCTTGCTTCGTGAACGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGGGAAACAAGCAAGGTGATGAAAGGTGTTCAACATGGAGCCTGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCATGTCTTTAGAAAAAAGATACATGAGGCAAAAGAATTTGAAAGTTTTGAGAGCATTCACTTGATGAGAAATGGATCAGAGCTATCAGATGATGGGAACCTGTTTGCTGTAGAAGATGTTACCTCATCAAAGAAAAGAAAAGATGCAGATAGCAAACACGATGACAAAGAATGTTTGGATCCATCATCCACCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTGGGGCCCAAGAAAATACTAGATCTGATGAATGTCCCATGGCTGACTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACAGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCAGAGATCTTCCTCAAGTGGAATGAAGCATTCAGATTTTCCTTCAAAAGATATGGGAAGTTTTGGTTTTCAGAACTCAGTAATCAAGCAACAAAATGATGTTGCAATTGACAACTACAATCATTCAGATGGATCATTACAACTTCAGAATGTGGAAACTAAAAGTCATGAAGCTGATCCCAAGGGAATTGTTTCACAGTCCACCATAGCAAAAAAAGGAAGGATTTTGACTGGTAACATTGCTGACACGAACATGAGAGAGAGTTTAAGGGTTGGCCTTAATCAAACTTTTCCCCCTCTAGAGTCAGAAGGAAACCATGCAGTGTTTGATTGTTCCATGCCAACACCATACTCTTGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCACTTGTTTATTTAGAAGATAGCTTCAATCAGTTGCCATTACATGGTAAGCAGCAGCAACACATCCATGTGGATCAATCACAATCAGTTGCTTCAATTAGTTCCGCTCCCTCAATAACCGAGGAAGAGGCTGCTGCTTGTATAGAACCAAAACCTTTGTTTGCAGATTACAACAATGATTATGCCAGTTCTGTGAGTTCAACAGGGAATGCAGTTGCCACCTTTCCTATTCAACCAGGAAGTCTTATTATGAATGGTCAATCTTCAGAACGCATTTCCACTACAACTTCTGGATTGAAAACACAGGAATATAATAATCTCAGTAGCATTTCTGATCAGGAAATTTACCAAAGAAACCTTTTGGGATGTGAGGCAGCTTCTGCATCATTGGACGAGGACTTGCATTTCTATTGGCTAGAAGGCGAATGCTATAATAATATGAACTTTGGTCTGCAGAATATAGGAATGTCTGAATATTATGATCCAGGACTTATTTCAGAAGCTCCAATCCACTTATATGATTCAGCTGATTACTCAGTTATGGATCAAGGTCTATTCATAGCATGA 1740 0.396 MDNGCFSSPKRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSKVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEAKEFESFESIHLMRNGSELSDDGNLFAVEDVTSSKKRKDADSKHDDKECLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGMKHSDFPSKDMGSFGFQNSVIKQQNDVAIDNYNHSDGSLQLQNVETKSHEADPKGIVSQSTIAKKGRILTGNIADTNMRESLRVGLNQTFPPLESEGNHAVFDCSMPTPYSWTEVPHMQLKEEHKSLVYLEDSFNQLPLHGKQQQHIHVDQSQSVASISSAPSITEEEAAACIEPKPLFADYNNDYASSVSSTGNAVATFPIQPGSLIMNGQSSERISTTTSGLKTQEYNNLSSISDQEIYQRNLLGCEAASASLDEDLHFYWLEGECYNNMNFGLQNIGMSEYYDPGLISEAPIHLYDSADYSVMDQGLFIA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0094 579 CDD REC_typeB_ARR-like 19 133 - -
Gso18g0094 579 SMART REC_2 17 129 IPR001789 GO:0000160
Gso18g0094 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 553 - -
Gso18g0094 579 SUPERFAMILY CheY-like 16 150 IPR011006 -
Gso18g0094 579 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
Gso18g0094 579 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Gso18g0094 579 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Gso18g0094 579 Gene3D - 17 189 - -
Gso18g0094 579 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Gso18g0094 579 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
Gso18g0094 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 553 IPR045279 GO:0009736
Gso18g0094 579 Gene3D - 192 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0094 Gso-Chr18 776405 780892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0094 13 262 Response Regulator Gene Family AT2G25180 55.556 1.81e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso18g0094 Response_reg 1.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0094 - K14491 gmx:100799877 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0094 18 776405 780892 Gso13g1527 13 30716949 30721352 GST
Gso18g0094 18 776405 780892 Gso5g1225 5 35759734 35764567 PCT
Gso18g0094 18 776405 780892 Gso8g0840 8 7799624 7803998 PCT
Gso5g1225 5 35759734 35764567 Gso18g0094 18 776405 780892 PCT
Gso8g0840 8 7799624 7803998 Gso18g0094 18 776405 780892 PCT