Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0087 ATGTATTTATCGGAGAAGCCTCGCCCCATCGATTTCTACAAGGAGGAAGGCGCGCGTGACATGATGATCGAGGTCGTCTCCAACGGCGACCTCCCTCCTCCGCCTCCTCCGCCGCCTCCGCCGATGATCCTCGGCGAGAGCAGCGGCGAGGACCCCGAGGTCGAGATAAAGGCCCCGAAGAAGCGCGCCGAAACCTGGGTTCAGGACGAGACGCGCTCCCTCATTGGCCTTCGCCGCGAGATGGACTCGCTCTTCAACACCTCCAAGTCCAACAAGCACCTGTGGGAGCAGATATCGGCGAAGATGAGGGAGAAGGGTTTCGACCGTTCTCCCACCATGTGCACCGATAAGTGGCGCAATCTCTTGAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGAGGGAGTGGCTCCGCGAAGATGTCGTATTACAAGGAGATTGACGAGATCCTCAGAGAGAGGAGCAAGAATGTGCAGTATAAGAGCCCTACTCCTCCGCCCAAGGTTGATTCCTTTATGCAGTTTGCTGATAAAGGTATTGATGATACCAGCATCTCTTTTGGGCCTGTTGAAGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCGGTTAAATGGGGTGATTATACAAGGCGAATAGGTATTGATGGCACCCCAGAAGCCATTAAAGAAGCAATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTACATTTTGGTTGGAGGATGAAGATCAGATTATCAGAAGTATCGACCGTGAAATGCCTTTAGGAAATTACACTCTTCACATTGATGAAGGAATGGCCATTAAATTACCCCTCTATGATGAGCCTGACCATATACCTGTGCATACTGAAGATAAGATATTTTACACTGAAGACGATTTCCGTGATTTTCTGACCCGCCGGGGTTGGATATGTTTAAGAGAATTTGACAGCTATAGAAATATTGACAATATGGATGATCTTCGACCCGGTGCCATATATCGTGGTGTGAGTTGA 999 0.4955 MYLSEKPRPIDFYKEEGARDMMIEVVSNGDLPPPPPPPPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPLGNYTLHIDEGMAIKLPLYDEPDHIPVHTEDKIFYTEDDFRDFLTRRGWICLREFDSYRNIDNMDDLRPGAIYRGVS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0087 332 CDD GT1 64 129 - -
Gso18g0087 332 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 193 - -
Gso18g0087 332 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 196 331 - -
Gso18g0087 332 Gene3D - 66 128 - -
Gso18g0087 332 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Gso18g0087 332 Pfam Myb/SANT-like DNA-binding domain 65 149 IPR044822 -
Gso18g0087 332 SMART sant 62 124 IPR001005 -
Gso18g0087 332 MobiDBLite consensus disorder prediction 29 45 - -
Gso18g0087 332 SUPERFAMILY Formin homology 2 domain (FH2 domain) 32 41 - -
Gso18g0087 332 PANTHER - 196 331 - -
Gso18g0087 332 PANTHER - 5 193 - -
Gso18g0087 332 MobiDBLite consensus disorder prediction 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0087 Gso-Chr18 729709 734949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0087 20 331 Trihelix Transcription Factor Family AT3G25990 61.644 7.72e-148 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso18g0087 Myb_DNA-bind_4 2.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0087 - - gmx:100137074 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0087 18 729709 734949 Gso13g1534 13 30768636 30774681 GST