Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0073 ATGATGGTGTTGGCGAATTCTGGTACGGGGCTTAGGAAACAGGTTTTTCCCGTAGATTACGAAACAGAGATTTCGCAGCGTCTCGTAGACGCTGCTCACTACGGTGACACAGACGCTGCGTTCGAATGCATCGCGAATCCCTTGGTGGACGTTAACTTCGTCGGAACGGTGTCGTTTAAGTCCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACAGAGTTAACTCGGCGTACGAGGAGTTCAAGACCGAGCTCACTGCTCTGTTTTTGGCTGCGCACACAGGGAATTTGTCACTCCTCCGGAAGCTTCTGAATGTTGGAGCAAATGTAAATATGAGATTGTTCCGGGGCTATGCCACAACAGCATCAGTGAGAGAAGGGCATCTAAAAATATTGGAGGTCCTTATCAATGCTGGGGCGTCACAACTTGCATGCGAGGAGGCTTTAATGGAAGCAAGTTACTTGGGGAGGGCCAGGTTTGCTGAACTACTCATGCAGTCCAACATGGTTCGTCCTCAGGTAGCAGTTCATGCTCTTGTCTCTGCATGTTGCAGAGGCTTCGTTGAGGTTATTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATCGATAGGATTTTGCTTCAATCTTCAAAACCATTTCTTCACGCTAGTGTTGATTGCAATGCATTATTCGCCGCTGTGGTCAGCAGGCAGATTAATGTAGTTGGATTACTGTTGCAGGTTGGCGTAAGGCTTGATATCAAGGTCAAACTTGGGGCCTGGTCGTGGGACACGGATACAGGAGAAGAATTTCGTGTGGGTGTTGGGCTAGCTGAGCCTTATCCAATCACATGGTGTGCTGTGGAGTATTTTGAATCCACTGGTGCTATATTGCACATGCTTCTCTGCCAGCTCTCGCCTAATAGCTTGCACACTGGGAGGAGTCTCTTGCACCATGCTATCATTTGTAACAATGAAAAAGCTGTAAATATACTTCTAAAGAACGGTGCTGATGCAGAAGTGGTAGTGCAAACCACAGAAGAAACCAATGAACACCCTATTCACATGGCTGCACGGCTCGGGTCATGTAACATTCTTCAGTGCCTGATTAATGGTGGTTGTAACTTGGACTCTCAAACAAAATGTGGAGACACAGCATTGATGATCTGTGCAAGGTACAAACATGAGAAGTGCCTTGGAGTCCTAGTATCAGCAGGTGCTGATTTGGGTATGGTAAATTCATCTGGTCACTGTGCAACTTCAATTGCAAACTGTGTTCAGTGGACTAAAGTCTTCCAGAGAGCAATCTTGGATGTAATCAGAGCCGGGAAGGTTGTTAAATCAAGCAACACCTCTAGATTTTCCGCTTTGTTATTTGTAACTCGTGCAAATGATATAGAGGGTTTGAAGAAACTCATTGAAAATAATAACATCGATCTAGATGAGCAAAATGCAAATGGATTTTCAGCTGCTATGATAGCTGCTGTAGGGGGCAATGTGGAGGCTTTCAAGTTACTTCTTTATGCTGGGGCTGATGTGACTAATCTTAAAAACAAGTATGGTTTGACAGCCCTTAACCTCATAGATATTAGCCAAAATGGTGAAGTGTTCCACAAGGTGATGCTTGAATATGCACTTAAAAAGGGAGGCAATGGTTCGATTGAGGTGAATCCTCTCCACCGTGCAGCTTGCTATGGGGACATAAACATTGCTCACAACCTACTAAAAGAAGGGTATGATGTCAATGCTTTTGATGGTCAAGGATATACCCCTTTGATGTTAGCAGCAAGAGGATGCCGCGGCGAGATGTGTGAGCTTTTGATCTCTTATGGAGCTAAATGTGATATTCAGAATGAGAGGCACGAGACAGCACTTTTACTTGCAAGAGAAAATGGAGCACGAAATGATGCAGAACGCGTGATATTGGATGAGGTAGCTCGAAAACTAGTCTTGCGTGGTGGTCGTGTTAAAAAACATACAAAGTGTGGTAAAGGTTCACCTCATGGTAAGTTACTAGTGATGATTGGAGCTGCTGGAATCTTACGTTGGGGGAAATCTAGTAAGAGAAACGTGATTTGTAAAGAGGCTGAGGTTGGACCAAGTGCGAAATTTCGATGGAATCGCAGGAGGAAGTTTGATGTTGATGAGCCAGGAATGTTCCATGTGGTCACTACAAAAAATAAGCAGGTACATTTTGTGTGTGAAGGTGGGGTTGAAATGGCTGAATTATGGGTAAGGGGGATTAGATTAGCAACTAGAGAAGCCATTTTTGGTCAAAGAGCTGATGAAGTTTGA 2286 0.4488 MMVLANSGTGLRKQVFPVDYETEISQRLVDAAHYGDTDAAFECIANPLVDVNFVGTVSFKSKTTEIVLQDESPHRVNSAYEEFKTELTALFLAAHTGNLSLLRKLLNVGANVNMRLFRGYATTASVREGHLKILEVLINAGASQLACEEALMEASYLGRARFAELLMQSNMVRPQVAVHALVSACCRGFVEVIDVLIKHGVDANAIDRILLQSSKPFLHASVDCNALFAAVVSRQINVVGLLLQVGVRLDIKVKLGAWSWDTDTGEEFRVGVGLAEPYPITWCAVEYFESTGAILHMLLCQLSPNSLHTGRSLLHHAIICNNEKAVNILLKNGADAEVVVQTTEETNEHPIHMAARLGSCNILQCLINGGCNLDSQTKCGDTALMICARYKHEKCLGVLVSAGADLGMVNSSGHCATSIANCVQWTKVFQRAILDVIRAGKVVKSSNTSRFSALLFVTRANDIEGLKKLIENNNIDLDEQNANGFSAAMIAAVGGNVEAFKLLLYAGADVTNLKNKYGLTALNLIDISQNGEVFHKVMLEYALKKGGNGSIEVNPLHRAACYGDINIAHNLLKEGYDVNAFDGQGYTPLMLAARGCRGEMCELLISYGAKCDIQNERHETALLLARENGARNDAERVILDEVARKLVLRGGRVKKHTKCGKGSPHGKLLVMIGAAGILRWGKSSKRNVICKEAEVGPSAKFRWNRRRKFDVDEPGMFHVVTTKNKQVHFVCEGGVEMAELWVRGIRLATREAIFGQRADEV* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0073 761 Coils Coil 463 483 - -
Gso18g0073 761 PANTHER ANKYRIN DOMAIN PROTEIN 9 756 - -
Gso18g0073 761 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Gso18g0073 761 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Gso18g0073 761 SUPERFAMILY Ankyrin repeat 28 256 IPR036770 -
Gso18g0073 761 Pfam Ankyrin repeats (3 copies) 556 635 IPR002110 GO:0005515
Gso18g0073 761 Pfam Ankyrin repeats (3 copies) 314 408 IPR002110 GO:0005515
Gso18g0073 761 Gene3D - 152 262 IPR036770 -
Gso18g0073 761 Gene3D - 303 430 IPR036770 -
Gso18g0073 761 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 309 338 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 176 205 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 449 479 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 483 512 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 85 114 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 222 251 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 584 613 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 346 375 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 551 580 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 379 408 IPR002110 GO:0005515
Gso18g0073 761 SMART ANK_2a 117 146 IPR002110 GO:0005515
Gso18g0073 761 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Gso18g0073 761 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Gso18g0073 761 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Gso18g0073 761 ProSiteProfiles Ankyrin repeat region circular profile. 483 510 - -
Gso18g0073 761 Gene3D - 533 670 IPR036770 -
Gso18g0073 761 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Gso18g0073 761 PANTHER ANKYRIN REPEAT-CONTAINING 9 756 - -
Gso18g0073 761 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Gso18g0073 761 Gene3D - 431 532 IPR036770 -
Gso18g0073 761 SUPERFAMILY Ankyrin repeat 309 637 IPR036770 -
Gso18g0073 761 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Gso18g0073 761 ProSiteProfiles Ankyrin repeat profile. 379 411 IPR002110 GO:0005515
Gso18g0073 761 Gene3D - 14 151 IPR036770 -
Gso18g0073 761 ProSiteProfiles Ankyrin repeat region circular profile. 309 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0073 Gso-Chr18 624096 629129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0073 317 535 Ion Channels AT2G25600 28.692 1.76e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0073 - - gmx:100795638 1497.26