Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0071 ATGCGAATAATGGATGTTGCTGAGGTTGAAGAAAGTTTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTGTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTTGGGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGACGAAATTGTGAAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGATAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTTTCTGATGACAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCCGGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCGCCAGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGACACTGAATCCACAAATTCAAGATCCGTAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGAAATGCTACTGAAAGTTTTTCTGCGCAAGAGGAAGATAATGAACAGTATGTTAGTTTTCTTAAAGTCTTGACAGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCCAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCATGAAGCGAATGCGATGGCTCTTGAAATTGGTGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAATAGAAATAAGGAAATTATGATATCAACAGGAATCTTGTCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTACGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTCGATAAAGCCAAGCATATGATTGGCACAAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTGAAGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCAAATATTCCAAACCTCCTTTCGTCTGGCATCATGGATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTATCAAGCAGGAAGAGAGAAAATGATGTTGGCTCCTGGACTTATAAGTGCCTTGGCTTCCACACTAGATACCGGTGAGCCCATAGAGCAGGAACAAGCTGCTTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTCAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCGAGAGGAAGAGAGAAGGCTCAGAAGCTCTTGATGGTCTTCAGAGAGCAGCGACAACGAGACCATTCTCCTGTTAAGATTGATCAACCTGAATCCGAAAGTAGTGATTTGTCTATGCCTCCTCCTGACACCAAACCGCTATCTAAAACAATATCTAGAAGAAAGGTGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2307 0.4179 MRIMDVAEVEESFFAASDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALGDSLKRVEDIVPQSIGCQIDEIVKELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPGGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVGSCKLKGVKVVPVEESGISEQMGGNATESFSAQEEDNEQYVSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQSAVHEANAMALEIGAMALFNLAVNNNRNKEIMISTGILSLLEEMISKTSSYGCAVALYLNLSCLDKAKHMIGTSQAVQFLIQILEAKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIMDGLQSLLVDQGDCMWTEKCIAVLINLAVYQAGREKMMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCQMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQRDHSPVKIDQPESESSDLSMPPPDTKPLSKTISRRKVVGKAFSFLWKSKSYSVYQC* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0071 768 SUPERFAMILY ARM repeat 432 704 IPR016024 -
Gso18g0071 768 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Gso18g0071 768 Coils Coil 178 198 - -
Gso18g0071 768 CDD RING-Ubox_PUB 286 328 IPR045210 -
Gso18g0071 768 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Gso18g0071 768 MobiDBLite consensus disorder prediction 711 742 - -
Gso18g0071 768 SMART arm_5 457 501 IPR000225 GO:0005515
Gso18g0071 768 SMART arm_5 626 667 IPR000225 GO:0005515
Gso18g0071 768 SMART arm_5 542 583 IPR000225 GO:0005515
Gso18g0071 768 PANTHER U BOX DOMAIN-CONTAINING 4 750 - -
Gso18g0071 768 SUPERFAMILY RING/U-box 279 357 - -
Gso18g0071 768 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Gso18g0071 768 Gene3D - 404 719 IPR011989 -
Gso18g0071 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Gso18g0071 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
Gso18g0071 768 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0071 Gso-Chr18 609706 615010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0071 4 767 U-box Gene Family AT1G24330 66.067 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0071 - - gmx:100804344 1419.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0071 18 609706 615010 Gso13g1550 13 30881961 30887325 GST
Gso18g0071 18 609706 615010 Gso5g1242 5 35929633 35934594 PCT
Gso18g0071 18 609706 615010 Gso8g0858 8 7954481 7959513 PCT
Gso5g1242 5 35929633 35934594 Gso18g0071 18 609706 615010 PCT
Gso8g0858 8 7954481 7959513 Gso18g0071 18 609706 615010 PCT