Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0061 ATGGTTATGGCGGAGGAAGAAGAAAGCGGAGTATCGATACAACTGGAATTCCCGAAGGGTCGGGTGAAGAAGATTATGGCGCTGGACAAAGACGTGAAGAGGGTGAGCTCAGAAGCGTTGTTTCTGGTGTCGCGCTCCACGGAATTATTCCTCCAATTCCTGGCTGAAAAATCGGCGCAGGTTGCGATTGAAAAGAAACGGAAGACCGTGAATCTGGAACATATAAGAGAGGCCGTGAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGAGCTTCCGCCGCCATCTCAGCCCACCAAGCCCGATAGGCCCACTCAGCCTGCCGGTCGGCCCAAATTGGATCCTCCTCCCCGTGGTACTCGCCGCATCGATCTATTTTTCCGGAAACCAGAACTTGACGACCCAGCCCAAGCCCAACCACCTGAAAATCCAGCTCAAGCTCAACCGCCTGAAAATCCAGACCAAGACCAAGCCCAATCGCCAGTACCCGTAGATGAGTCTTAG 507 0.5365 MVMAEEEESGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIREAVKRHQPTRDFLLDELPPPSQPTKPDRPTQPAGRPKLDPPPRGTRRIDLFFRKPELDDPAQAQPPENPAQAQPPENPDQDQAQSPVPVDES* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0061 168 MobiDBLite consensus disorder prediction 78 168 - -
Gso18g0061 168 MobiDBLite consensus disorder prediction 95 115 - -
Gso18g0061 168 MobiDBLite consensus disorder prediction 116 132 - -
Gso18g0061 168 Gene3D Histone, subunit A 1 94 IPR009072 GO:0046982
Gso18g0061 168 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 5 132 - -
Gso18g0061 168 SUPERFAMILY Histone-fold 15 82 IPR009072 GO:0046982
Gso18g0061 168 MobiDBLite consensus disorder prediction 150 168 - -
Gso18g0061 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 16 79 IPR003958 -
Gso18g0061 168 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0061 Gso-Chr18 521661 522436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0061 6 130 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.800 2.13e-48 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso18g0061 CBFD_NFYB_HMF 2.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0061 - - gmx:100793004 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0061 18 521661 522436 Gso13g1559 13 30940114 30940845 GST