Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0048 ATGGAGTGGAATGCAAAATCTCTCGGGCAATGGGACTGGGAGCACTTATTCTTCAATACAAAAGCAGCTGAGAATCCAAGGTTACAACCAACTGATTGTAGCAGTGAAGCAGATCCAGAAATCAATGTTGGACTGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAATACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGCAGGGAATCTATATTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAATTGTGCAATGGAGAGCCGGTTGAAACTTCTCCAGCAGCAGTGCCCTCTCCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAACGATTGTACTTTGAGGATGTCTGCACCGGAAGTGATTCCAAGAAACCATCTTCCTTTGAGGTTCCCATTTTATCAGGGAAGAAATATAAAACAAGTAGTCAGACTGTACAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGAGTTTGTGAAGCTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGTAGGCAACGACTTTCAGATCACAATGCAAGGCGCCGCAAAACTCAGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCTCCCTATGATGGGAGGCAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCTTGGCAAGATATGCACAGCAGCAAGCACCCCCAAACAAAAGAATTCCTCCCGAAGCCTGCCAAAGCCTTCAATAAGATACCGAGTATAGTCTCTATGCTTTCTGATGATTCCAGTGGCCTTCTAACATCTAGAGGCATAGCAACGAAGAGTATTGTTCCAGGTATGGAAGTTCCAAATGGTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACGAATTCATCATGGTGTCCATATGAGACCAAGTCCCTTTCTCTGGAACACTCCACTCGGACAACACACTCAATCACTCAGCATCGTTTACCACTTCCTTCCTCGGAGTATTGGCACACTGATCAACAAAATTCAAGCATGTGTATCTCATTCTCGGATTGCGATAGCAGCAATCGCTTTCAAGACTTTCAGCTCTTGAGCTCACCCTATGAATCAGGTTTTCCGTGCAACCAACTGGATTAA 1302 0.4439 MEWNAKSLGQWDWEHLFFNTKAAENPRLQPTDCSSEADPEINVGLLYPSGGSACSGSELIHASSSRSSKSASNNSSSNGDSRESILTLEGSQDDSTGKKELCNGEPVETSPAAVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKKPSSFEVPILSGKKYKTSSQTVQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVIAGLERRFCQQCSRFHALSEFDDKKRSCRQRLSDHNARRRKTQPDSIQLNPSALSSSPYDGRQIMSPFAFSRTATNLAWQDMHSSKHPQTKEFLPKPAKAFNKIPSIVSMLSDDSSGLLTSRGIATKSIVPGMEVPNGTQDVNRALSLLSTNSSWCPYETKSLSLEHSTRTTHSITQHRLPLPSSEYWHTDQQNSSMCISFSDCDSSNRFQDFQLLSSPYESGFPCNQLD* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0048 433 MobiDBLite consensus disorder prediction 63 92 - -
Gso18g0048 433 MobiDBLite consensus disorder prediction 63 120 - -
Gso18g0048 433 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Gso18g0048 433 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 432 - -
Gso18g0048 433 MobiDBLite consensus disorder prediction 235 259 - -
Gso18g0048 433 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Gso18g0048 433 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 432 IPR044817 GO:0003677
Gso18g0048 433 SUPERFAMILY SBT domain 169 250 IPR036893 GO:0003677|GO:0005634
Gso18g0048 433 MobiDBLite consensus disorder prediction 24 44 - -
Gso18g0048 433 Pfam SBP domain 171 244 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0048 Gso-Chr18 433584 439402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0048 1 394 SBP-box Gene Family AT5G43270 38.389 1.30e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso18g0048 SBP 8.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0048 - - gmx:100781289 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0048 18 433584 439402 Gso13g1574 13 31044206 31050225 GST