Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0045 ATGCCACCTGGTTTGGAGTACAATATCGATGATCTGTTTCAAGAAGCTAAGAGGAGATGGCTCAAGCCTGTGGAAGTGCTTTACATTTTACGGAATCACGACCAGTGCGAGTTCACCCACCAGCCCCCTCATCAGCCAGCTGGTGGATCCCTGCTTCTGTTTAATCGAAGAATCATGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAAAGATGGCAAAACTGTGGGAGAAGCGCATGAACGGCTTAAGGTTGGCAATGTTGAAATCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGGAATATGACCATATTGTTCTTGTGCATTATAGAGAAACTAGTGAGGGGAAATCCAAATCTGAACATGTCACACAATTGTCATCAGGTTCCTCTCCTGTTTTTAGTCAGAGTCATAGCTCGTATACTACTCACAACCCAGGAACAGCATCCATGTTTGGTGATTCATGTGAACCTAATCAGAAATTTTCTAGTTCTGGGTCTTTAGAAGATACATCCGAAGCACAAGCCTTGCGCCAATTGGAAGAACAGCTGAGTTTGAATGAGGACATTTTCAATGAAATTGCACTTGATTTAATCCCAGGTCAAGATCAAAGGGTGGTTTATAAGCAAGATAACTCTGTAGCTTTGTCTGGACCAAATGATCCAGGACAACCTTGTGATGGATATAATGGAAGAGAAGATGACAGTGGTACATATTATCATGACTTTCTTGATGATTGTCCTGGTGGAAATGAAAAAACTATATACTGGACTGAAGTGCTGGAATCGTGTAAGCCCTTATCTGTGACCAAATTACCAGATCAACATGCATATGACGCGATTGAAAATGGAAAGTCATTATTTTCTTCAGGAAGAGGAATGATTGCCAACCGGGAAAAAAATCAGTGGCTAAACTCCAACAGTAATAATGTTGAAAACTCTGTTTTCTTGTTTCCTCAAGACATTGGAGTCAAATTTCCTCCATATTCTATGGTAGAAACTCCAGGAACTAACTATGACTACTATGAAACCTGTTTTGATCAATTCCAAAATCAAGAACCTCTGGGTGTAGATTCAAGCTTCACTGTTGTGCAGAAACAGAAATTTACAATTAGGGCAGTTTCCCCAGAATACTGTTATGCCACTGAGACTACAAAGGTGATCATTATTGGGTCATTTCTATGCCATGACTCGGATTCTACCTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCAGAGATAATTCAGGATGGTGTAATCTGTTGTGAAGCTCCATCTTATCTTCTTGGGAAGGTTAATTTGTGTGTTACTTCAGGAAATAGGGTGCCATGCAGTGAAGTGAGGGGGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAGGCAGCAAAAGTCTAGAAGATCTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTACAAAGGATGACAGAATAGAATCTGGAAGTTATCTTTCAACAGAACAGAAAGATGATGATGATTCATGGAGCCATATTATTATAGACACTCTTCTAGATGGCACCAGAACATCATCTGATACTGTTAACTGGCTTCTTGAAGAGCTGCTGAAGGATAAGTTGCAGCTCTGGCTTTCTAACCGAAGAGATGAAGGGACAGGCTGTTCTTTTTCCAGGAAAGAACAGGGGATAATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAGCCCCATTCTTAGTTGTGGTGTGAATATAAATTTCCGTGACATCAATGGGTGGACCGCTCTTCATTGGGCTGCTAGGTTTGGGAGGGAAAAAATGGTTGCTTCGCTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTTCACAAGATCCAACAGGTAAAACTGCTGCATCTATTGCAGCTAGCCATGGCCATAAGGGACTGGCAGGTTATCTTTCAGAGGTAGACCTAACAAGCCATCTGTCATCCCTCACATTGGAAGAGAGTGAGCTTTCTAAAGGATCTTCTGAGCTTGAAGCCGAGTTAACTGTCAGTAGTGTCTCTAAAGAAAATCTTGTGGCCAGTGAGGATCAGGTTTCACTACAAGCTTTCCTGGATGCTGTTAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGAAAGAGAAGCTGCTGCTGACGCTGGTCTAGATGGATATTGTATTGATGCAGGTAGCATTGATAATAACATTTCAGTGCTTTCTGCCGTGTCAAAACTTAGTTCTCAGAGCTGTCGTGATTACAATTTAGCTGCCTTATCGATTCAGAAGAAATATCGAGGCTGGAAAGGTCGTAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCTTGTGTAAGGGGATACCAGGTTCGGAAGCAATACAAGTTAATATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGCAGAAAACGAATTGGTATACGAAGTGTCCGGCAAGAAATGGAATCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAGCGTGTTCCGGAAAGAGAAAGTAAATGCAGCAATTGAAAAGGCTTTGAAGCAGGTGCTTTCCATGGTCCATTCCTCTGGTGCTCGTCAGCAATATAGGCGCTTGCTTTTGTTGTATCGTCAAGCCAAGGCCAAGACTGAACGTGGCAGCACGAGTGATGAAGCACCCTTATCAACTTCGGAAGAGGAAGTTTCCAATATGGAAGATGATGATTTGTGTCAATTTTGGGAAACGTTCTGGCCTTCCTAG 2889 0.4237 MPPGLEYNIDDLFQEAKRRWLKPVEVLYILRNHDQCEFTHQPPHQPAGGSLLLFNRRIMRFFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLEPEYDHIVLVHYRETSEGKSKSEHVTQLSSGSSPVFSQSHSSYTTHNPGTASMFGDSCEPNQKFSSSGSLEDTSEAQALRQLEEQLSLNEDIFNEIALDLIPGQDQRVVYKQDNSVALSGPNDPGQPCDGYNGREDDSGTYYHDFLDDCPGGNEKTIYWTEVLESCKPLSVTKLPDQHAYDAIENGKSLFSSGRGMIANREKNQWLNSNSNNVENSVFLFPQDIGVKFPPYSMVETPGTNYDYYETCFDQFQNQEPLGVDSSFTVVQKQKFTIRAVSPEYCYATETTKVIIIGSFLCHDSDSTWACMFGDVEVPAEIIQDGVICCEAPSYLLGKVNLCVTSGNRVPCSEVRGFEFRNKTTSCTRCNSLETEGSKSLEDLLLLVRFAEMLLSASTTKDDRIESGSYLSTEQKDDDDSWSHIIIDTLLDGTRTSSDTVNWLLEELLKDKLQLWLSNRRDEGTGCSFSRKEQGIIHMISGLGFEWALSPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSSQDPTGKTAASIAASHGHKGLAGYLSEVDLTSHLSSLTLEESELSKGSSELEAELTVSSVSKENLVASEDQVSLQAFLDAVRNAAQAAARIQAAFRAHSFRKRKEREAAADAGLDGYCIDAGSIDNNISVLSAVSKLSSQSCRDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQACVRGYQVRKQYKLILWAVGILDKVVLRWRRKRIGIRSVRQEMESNEEESDDEDFLSVFRKEKVNAAIEKALKQVLSMVHSSGARQQYRRLLLLYRQAKAKTERGSTSDEAPLSTSEEEVSNMEDDDLCQFWETFWPS* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0045 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 844 IPR027417 -
Gso18g0045 962 Gene3D - 793 840 - -
Gso18g0045 962 ProSiteProfiles IQ motif profile. 793 822 IPR000048 GO:0005515
Gso18g0045 962 Pfam IQ calmodulin-binding motif 818 837 IPR000048 GO:0005515
Gso18g0045 962 Pfam IQ calmodulin-binding motif 796 813 IPR000048 GO:0005515
Gso18g0045 962 Gene3D - 528 679 IPR036770 -
Gso18g0045 962 ProSiteProfiles Ankyrin repeat region circular profile. 614 640 - -
Gso18g0045 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 960 - -
Gso18g0045 962 Pfam IPT/TIG domain 386 457 IPR002909 -
Gso18g0045 962 MobiDBLite consensus disorder prediction 134 190 - -
Gso18g0045 962 ProSiteProfiles IQ motif profile. 732 761 IPR000048 GO:0005515
Gso18g0045 962 SMART iq_5 792 814 IPR000048 GO:0005515
Gso18g0045 962 SMART iq_5 815 837 IPR000048 GO:0005515
Gso18g0045 962 SMART iq_5 731 753 IPR000048 GO:0005515
Gso18g0045 962 SUPERFAMILY Ankyrin repeat 585 675 IPR036770 -
Gso18g0045 962 Pfam Ankyrin repeats (3 copies) 602 674 IPR002110 GO:0005515
Gso18g0045 962 SUPERFAMILY E set domains 386 470 IPR014756 -
Gso18g0045 962 SMART ANK_2a 614 643 IPR002110 GO:0005515
Gso18g0045 962 SMART ANK_2a 653 682 IPR002110 GO:0005515
Gso18g0045 962 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gso18g0045 962 MobiDBLite consensus disorder prediction 927 948 - -
Gso18g0045 962 MobiDBLite consensus disorder prediction 136 190 - -
Gso18g0045 962 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Gso18g0045 962 CDD IPT 386 470 - -
Gso18g0045 962 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gso18g0045 962 ProSiteProfiles Ankyrin repeat profile. 614 646 IPR002110 GO:0005515
Gso18g0045 962 PANTHER CALMODULIN-BINDING PROTEIN 1 960 - -
Gso18g0045 962 ProSiteProfiles IQ motif profile. 816 840 IPR000048 GO:0005515
Gso18g0045 962 Gene3D Immunoglobulins 380 475 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0045 Gso-Chr18 402618 411215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0045 5 952 CAMTA Transcription Factor Family AT1G67310 49.556 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso18g0045 CG-1 5.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0045 K21596 - gmx:100791430 1818.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0045 18 402618 411215 Gso5g1262 5 36168958 36179297 PCT
Gso18g0045 18 402618 411215 Gso8g0876 8 8141737 8149853 PCT
Gso5g1262 5 36168958 36179297 Gso18g0045 18 402618 411215 PCT
Gso8g0876 8 8141737 8149853 Gso18g0045 18 402618 411215 PCT