Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0042 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCAGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGCTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTACAACGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAATAAGGACCCAATTCATGCTGGATCAGCTTTCTGATCTACAACGTAAGGAACACTTTCTAGGTGAGTCAAACAGAGATCTCAGACAAAGGTTGGAAGAGTTTCAAATAAATCCACTCCAACTGAATCCCAGTGCTGAAGATATGGGGTATGGACGCCATCCAGGTCAGCCCCAAGGCCATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACCTTGCAAATTGGATATCATCCTGATCCAGTATCAGTGGTGACAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA 732 0.4522 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSGSSMLKTLERYQKCNYGAPEDNVATKEALVLELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLRQRLEEFQINPLQLNPSAEDMGYGRHPGQPQGHALFQPLECEPTLQIGYHPDPVSVVTEGPSMNNYMAGWLP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0042 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gso18g0042 243 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Gso18g0042 243 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g0042 243 Coils Coil 128 148 - -
Gso18g0042 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g0042 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g0042 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso18g0042 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso18g0042 243 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g0042 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Gso18g0042 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso18g0042 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 230 - -
Gso18g0042 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso18g0042 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0042 Gso-Chr18 384007 389092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0042 1 243 MADS-box Gene Family AT1G24260 72.764 1.11e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso18g0042 K-box 4.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0042 - - gmx:547686 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0042 18 384007 389092 Gso13g1581 13 31098552 31103008 GST
Gso5g1269 5 36216666 36225192 Gso18g0042 18 384007 389092 PCT
Gso8g0880 8 8172273 8179773 Gso18g0042 18 384007 389092 PCT