Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0031 ATGGTTTCTTTTACAAGTTATTTCATTTATAGAAGAGCAGAGAACCCATTGCAAATCCTCAAATTTCGTTGCACCTTCTTTTTCTCACCGGAAACTACAAGTTGGCAAACATATGGTGCCTTGAGATATTGTCATTCTGGGTCAGAATGCGGTAAAAACCCGAAATTGACACCAAACGAGAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATTCAATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGGTTGTTCGTTATATGGCTGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCTCAAGGTGTCCGGGAGATTAGGAAAGAGAAGGAACTGTTGTATCGTTTAGAGAATAAGGGTGTCATCAAGCCAAATCAACCTTATCGTTGTAAGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCACGCGAAAAGGATGAACCAGATAGAGTCTTCCAGGGGGAGCAGGAGGGTGAAGTTGGTGGCCAAGTATTCTATGAAAATGGAGAAGTATAAGAAGGCTGCAAGTGATATTCTCACTCCCAAAGTGGGGTATGGTTTGGCGGATGAGCTCAGACGGGCTGGTTTTTGGGTTCAAACTGTGTCAGATAAGCCACAAGCTGCAGATCAAGCATTGCAAAGCCACATCGTGGATATAATGGATCATAGGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATTCTGATTTTGTTGACGTGATAAATGAAGCGAAGATGCGATGTCTGAAGACGGTTGTCATTGGGGATATTGATGATGGTTTCTTGAAGAGGACTGCTGATACTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAAGCTAAAAAGCAGGCTGTTTCAGTTGTGAAAAACTGGAAGGATCGAGATATCTTAAAAAGGTTGGAGTGGACATACAACCCTGATGAGGATAAAAATAATTTCAGTCTGGATGATGCCATTACTGAAGCATCTGAAGATGATAATATTGATTGA 1071 0.4258 MVSFTSYFIYRRAENPLQILKFRCTFFFSPETTSWQTYGALRYCHSGSECGKNPKLTPNEKPNRVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMAAYANSHTFSHVPQGVREIRKEKELLYRLENKGVIKPNQPYRCKVCGRKFHTNDKLVNHFKQLHEREHAKRMNQIESSRGSRRVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELRRAGFWVQTVSDKPQAADQALQSHIVDIMDHRRVECVVLVSDDSDFVDVINEAKMRCLKTVVIGDIDDGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDEDKNNFSLDDAITEASEDDNID* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0031 356 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Gso18g0031 356 SMART c2h2final6 142 165 IPR013087 -
Gso18g0031 356 Pfam NYN domain 214 282 IPR021139 GO:0004540
Gso18g0031 356 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Gso18g0031 356 CDD PIN_LabA-like 153 283 - -
Gso18g0031 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Gso18g0031 356 Gene3D Classic Zinc Finger 121 204 - -
Gso18g0031 356 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 55 356 - -
Gso18g0031 356 PANTHER - 55 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0031 Gso-Chr18 308531 310099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0031 59 356 C2H2 Transcription Factor Family AT4G12240 62.460 1.11e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g0031 NYN 4.6e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0031 - - gmx:100789840 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0031 18 308531 310099 Gso13g1592 13 31179992 31181609 GST