Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0025 ATGGCTGCCTCCAAATTAAAACAAAAACCCTTACTTTCTCTCTGTAAGCTCTTTCTTCTGTTGTTGTCTCTCGCCTGCACCGCCATTGCCGACGATGGCGTGTTCATGTCGAAGCTCGCGAAGGCGCTGATCCCGTCGCCGTCGGGGTGGACGGGGAGCAGCTTCTGCCAATGGACAGGCGTGAAGTGCAGCGCCAACCGCGTCACCATAATCAAAATCGCTTCTCAGTCACTCGGCGGAACTCTTCCTCCGGATCTGAACTCGCTCTCCCAACTCACCTCGCTCTCTCTCCAGAACAACAAGCTCTCCGGCGCATTGCCTTCACTCGCCAACCTCTCCATGCTCGAAAGCGTTTTCCTTGACGGCAATAACTTCACCTCCATCCCCGATGGTTGCTTCCAGGGGCTCACCAGTTTGCAAACCCTCAGCATGGCCGATAGCGTCAACCTTGCCCCATGGACGATTCCCACCGAGTTGACGGATAGCAACAACCTCGTGAAACTCGACCTCGGAAACGCAAACCTCATCGGTACCTTGCCTGATGTATTCGACAAGTTTGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACAACCTCACTGGGGGTTTACCCAAGTCCTTTGGGGGATCTGAGATTCAGAATCTGTGGCTCAACAATCAGAACGGCTTCGGATTTTCGGGTTCCATTGAGGTGCTTGCTTCCATGACCCACTTGTCTCAGGTGTGGCTTCAGAAGAACCAGTTCACGGGTCCCATTCCGGATTTGTCAAATTGCACCACTTTGTTTGACCTGCAGCTGAGAGACAACCAGTTAACCGGTGTGGTTCCACCTTCTCTCATGTCCCTTTCTAGCTTGCAGAACGTTTCTCTGGACAACAATGCCCTTCAGGGTCCTGTTCCTTCGTTTGAGAAAGGTGTGAAGTTCACTCTCGATGGGATCAATAGTTTTTGTCTGAAAGATGTTGGACCCTGCGATTCTCGTATCTCCACTTTGCTTGATATTGCTGCGGGTTTCGGGTATCCCCTTCAGTTGGCGCGTTCCTGGACTGGGAACGATCCTTGTGATGATTGGAGTTTTGTTGTGTGTGCAGGGGGGAAGATTATTACGGTGAATTTGGCAAAGCAGAATTTGACGGGAACCATTTCACCTGCGTTTGCTAATTTAACTGATTTGAGGAACTTGTTTCTCAATGATAACAATTTGGGTGGTTCAATACCAGGGAGCTTGACTAATCTGGCTCAGCTTGAGGTTCTTAATGTGTCTAATAACAACTTATCTGGTGATGTTCCCAAGTTCCCTACCAAGGTGAAGTTCACTACTGCAGGTAATGATTTACTTGGGCGTTCTGATGGTGGTGGTGGTGGCAGTGGAACTACTCCGTCGAAGGGTTCCGGTGATGCACCGAGTGGAAGCCCGAGCACAGGGCCAGGTGGATCTTCACTTTCGCCTGCTTGGATCGCAGGTATTGTTCTAATTGCTGTGTTTTTTGTTGCCGTCGTGGTGTTTGTGTTTTGCAAGTGTCATGCTAAAAACCGGCATGGGAAGTTTGGAAGGGTTAATAATCCGGAAAATGGGAAAGGAGAGGTTAAGATTGATATGATGAGCGTTACCAATTCCAATGGATATGGTGGTGTTCCCAGTGAGTTGCAAAGCCAGGGCAGTGAGCGTAGTGACGTTCATGTTTTTGAGGGTGGGAATGCTACTATTTCAATCCAGGTTCTTCGGCAAGTAACGGATAATTTCAGTGAGAAGAACATTTTGGGTAGGGGAGGGTTTGGGGTTGTTTATAAAGGGGAATTGCATGATGGAACTCAAATTGCTGTAAAGAGAATGGAATCTGTTGCAACAGGGAGTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTTAGTAAAGTTCGGCACAGGCATTTGGTGGCCCTTTTAGGGTATTGCATTAACGGCAACGAAAGGCTCTTGGTGTACGAGTATATGCCTCAAGGGACATTAACGCAACACCTGTTTGATTGGGGTGAAAATGGCTGTGCTCCTTTGACTTGGAAACAAAGAGTAGCAATAGCTTTGGATGTAGCTCGGGGAGTGGAATACTTGCACAGCTTGGCTCAGCAAAGCTTCATTCACAGGGACTTAAAGCCCTCAAACATATTGTTGGGTGATGACATGAGAGCCAAGGTTGCAGATTTTGGTTTGGTTAAAAATGCGCCAGATGGGAAGTATTCTGTTGAGACACGCTTGGCTGGAACATTTGGATATCTTGCACCTGAATATGCAGCTACGGGAAGAGTGACGACCAAAGTAGATGTGTACGCATTTGGAGTAGTTTTGATGGAACTGATTACGGGTAGAAGGGCATTGGACGATACTGTGCCTGATGAAAGGTCTCACTTGGTTTCCTGGTTCCGTAGGGTACTGATTAACAAAGAGAACATCCCAAAGGCAATTGATCAAACTCTCGATCCCGATGAGGAAACCATGGAGAGTATATATAAAGTGGCTGAGCTAGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCTGATATGGGGCATGCTGTGAATGTCTTGGGTCCTCTGGTAGAGCAATGGAAGCCCACCACCCATGAAGAAGAAGAAGGTTATGGCATTGACCTTCACATGAGCCTTCCTCAAGCTCTGCGAAGATGGCAAGCCAATGAAGGCACTTCCACAATGTTTGACATGTCCATCTCACAAACTCAATCAAGTATTCCCGCTAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGCTGA 2787 0.4808 MAASKLKQKPLLSLCKLFLLLLSLACTAIADDGVFMSKLAKALIPSPSGWTGSSFCQWTGVKCSANRVTIIKIASQSLGGTLPPDLNSLSQLTSLSLQNNKLSGALPSLANLSMLESVFLDGNNFTSIPDGCFQGLTSLQTLSMADSVNLAPWTIPTELTDSNNLVKLDLGNANLIGTLPDVFDKFVSLQELRLSYNNLTGGLPKSFGGSEIQNLWLNNQNGFGFSGSIEVLASMTHLSQVWLQKNQFTGPIPDLSNCTTLFDLQLRDNQLTGVVPPSLMSLSSLQNVSLDNNALQGPVPSFEKGVKFTLDGINSFCLKDVGPCDSRISTLLDIAAGFGYPLQLARSWTGNDPCDDWSFVVCAGGKIITVNLAKQNLTGTISPAFANLTDLRNLFLNDNNLGGSIPGSLTNLAQLEVLNVSNNNLSGDVPKFPTKVKFTTAGNDLLGRSDGGGGGSGTTPSKGSGDAPSGSPSTGPGGSSLSPAWIAGIVLIAVFFVAVVVFVFCKCHAKNRHGKFGRVNNPENGKGEVKIDMMSVTNSNGYGGVPSELQSQGSERSDVHVFEGGNATISIQVLRQVTDNFSEKNILGRGGFGVVYKGELHDGTQIAVKRMESVATGSKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLGPLVEQWKPTTHEEEEGYGIDLHMSLPQALRRWQANEGTSTMFDMSISQTQSSIPAKPSGFADSFDSMDCR* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0025 928 MobiDBLite consensus disorder prediction 906 928 - -
Gso18g0025 928 ProSitePatterns Protein kinases ATP-binding region signature. 587 609 IPR017441 GO:0005524
Gso18g0025 928 CDD STKc_IRAK 587 860 - -
Gso18g0025 928 SUPERFAMILY L domain-like 35 432 - -
Gso18g0025 928 Gene3D Ribonuclease Inhibitor 326 450 IPR032675 -
Gso18g0025 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Gso18g0025 928 Pfam Protein tyrosine and serine/threonine kinase 584 855 IPR001245 GO:0004672|GO:0006468
Gso18g0025 928 Gene3D Transferase(Phosphotransferase) domain 1 659 880 - -
Gso18g0025 928 ProSiteProfiles Protein kinase domain profile. 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0025 928 Pfam Leucine Rich Repeat 188 208 IPR001611 GO:0005515
Gso18g0025 928 MobiDBLite consensus disorder prediction 454 478 - -
Gso18g0025 928 SUPERFAMILY Protein kinase-like (PK-like) 558 857 IPR011009 -
Gso18g0025 928 PANTHER OSJNBA0070M12.3 PROTEIN 17 928 - -
Gso18g0025 928 SMART serkin_6 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0025 928 Gene3D Phosphorylase Kinase; domain 1 544 658 - -
Gso18g0025 928 Gene3D Ribonuclease Inhibitor 35 321 IPR032675 -
Gso18g0025 928 Pfam Leucine rich repeat N-terminal domain 44 64 IPR013210 -
Gso18g0025 928 Pfam Leucine rich repeat N-terminal domain 329 362 IPR013210 -
Gso18g0025 928 Pfam Leucine rich repeat 90 145 IPR001611 GO:0005515
Gso18g0025 928 SMART LRR_typ_2 412 435 IPR003591 -
Gso18g0025 928 SMART LRR_typ_2 112 135 IPR003591 -
Gso18g0025 928 SMART LRR_typ_2 186 209 IPR003591 -
Gso18g0025 928 SMART LRR_typ_2 89 111 IPR003591 -
Gso18g0025 928 SMART LRR_typ_2 388 411 IPR003591 -
Gso18g0025 928 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 17 928 - -
Gso18g0025 928 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Gso18g0025 928 MobiDBLite consensus disorder prediction 443 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0025 Gso-Chr18 262968 267077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0025 71 862 Receptor kinase-like Gene Family AT5G07280 33.292 1.15e-99 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso18g0025 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0025 - - gmx:100781851 1705.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0025 18 262968 267077 Gso13g1597 13 31217779 31222033 GST