Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0017 ATGGCGTTCTGTAATAAGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACATGCCCCTGTTGCGTCCATGCTTAATTACATCCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAAGGATGCATTTTCTGGCTTTGGAGATGTGGTTGATGCAAAAGTTATAACTGATAGAGACAGTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAATGATGAGTCTGCAAGTTCGGCACTCTCTGCAATGGACGGGAAGGATCTAAATGGGCGAAGCATTCGGGTATCCTATGCAAATGATAAACCATCTGCACCTCGACCTGGTGGCGGTGGCGGTTATCGTGGCGGGGATTATGATGGTGATTTTGCTTCTCGTAGTGGTGGTTGGTGA 432 0.4745 MAFCNKVGNVLRQGAARSTHAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLNGRSIRVSYANDKPSAPRPGGGGGYRGGDYDGDFASRSGGW* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0017 143 Gene3D - 31 143 IPR012677 -
Gso18g0017 143 MobiDBLite consensus disorder prediction 110 143 - -
Gso18g0017 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Gso18g0017 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Gso18g0017 143 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 134 - -
Gso18g0017 143 SUPERFAMILY RNA-binding domain, RBD 33 136 IPR035979 GO:0003676
Gso18g0017 143 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 134 - -
Gso18g0017 143 SMART rrm1_1 37 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0017 Gso-Chr18 179340 181437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0017 1 124 Eukaryotic Initiation Factors Gene Family AT4G34110 34.677 3.39e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0017 - - gmx:100499841 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0017 18 179340 181437 Gso13g1605 13 31290879 31292870 GST