Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0008 ATGCGAACTTCATGGGCTGATTTGGCTGCCAATTCGGCGTCTGAAAATGCGGGAACCTCTAACTCCACAGCTCCTTCGCGGCCGGTTTATGTGCCTCCGCATCTGAGGAACCGTGGACCATCAGAATCCCTTGCTCCAGCACCTCCATCCAATAATAATAATAATGTGGGATCACGGTGGGGTGCTCTGCCACCCAGAAACGGATGGGGGAACAGAAGTGGTGGTTGGGATCGGCGCGAAGTGAATCCCTTCGGAGGTCAGGAGGATGCAGCAGCAGAAGAGGAGTTGGGAGGCGAGGAGCAGCAGGAGAGCACGGGAATTAACTTTGATGCGTATGAGGACATTCCGGTGGAGACGAGCGGTGAAAACGTGCCCCCGGCTGTGAATACTTTTGCGGAGATTGACTTAGGCAACGCGCTTAATCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCGGTTCAGCGGCATGCCATACCGATATCCCTTGCGGGGCGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACTGCCGCATTCTGTTTCCCAATCATCAGTGGGATTATGAGAGGCCAAGCCCAAGTCCTCCAGAGGCCGCCTCCTCGCGGTGTCCGCACAGTCTACCCACTTGCCCTTGTTCTCTCACCTACTAGGGAGCTATCCATGCAGATACATGAAGAGGCTAGGAAATTTTCTTACCAGACTGGGGTTAGGGTCGTTGTTGCTTATGGTGGAGCTCCGATAAACCAACAGCTCCGGGAACTTGAGAGAGGGGTGGATATCCTTGTTGCAACTCCGGGAAGACTGGTAGATTTACTGGAGAGAGCTAGAGTTTCATTGCAAATGATTAGGTATTTGGCCTTAGACGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCAGCAGCTGCCAGACAGACTATGCTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGACTTGCCTCCGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCACAGAAGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTAGAGCACTGGTTGTGCCGTAATAATTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGAATTGGAAGGACAGGGCGGGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCCCTGGCAAGGGCCTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGATTGGCTCTCACGGTTTGCTGCTCGCTCTTCCTTTGGTGGGGGAAGGAACCGTCGATCAGGAGGAGGCCGTTTTGGTGGCCGTGACTTTCGAAGAGAGGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTGCAGGAAACAACAGTAGTGGATATGGCACTTCTGGTGGGTATGGTGGAGGATATGGTCCTGGGGTAACCAGTGCATGGGATTGA 1776 0.4921 MRTSWADLAANSASENAGTSNSTAPSRPVYVPPHLRNRGPSESLAPAPPSNNNNNVGSRWGALPPRNGWGNRSGGWDRREVNPFGGQEDAAAEEELGGEEQQESTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGNALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQAQVLQRPPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAAARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQKANGVQGKQALTLVFVETKKGADALEHWLCRNNFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPDWLSRFAARSSFGGGRNRRSGGGRFGGRDFRREGSFSRGGSDYYSAGNNSSGYGTSGGYGGGYGPGVTSAWD* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0008 591 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 34 563 - -
Gso18g0008 591 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 34 563 - -
Gso18g0008 591 SMART ultradead3 148 363 IPR014001 -
Gso18g0008 591 MobiDBLite consensus disorder prediction 44 60 - -
Gso18g0008 591 MobiDBLite consensus disorder prediction 572 591 - -
Gso18g0008 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 505 IPR027417 -
Gso18g0008 591 Pfam Helicase conserved C-terminal domain 372 487 IPR001650 -
Gso18g0008 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Gso18g0008 591 CDD SF2_C_DEAD 360 496 - -
Gso18g0008 591 Gene3D - 351 530 IPR027417 -
Gso18g0008 591 Gene3D - 86 350 IPR027417 -
Gso18g0008 591 MobiDBLite consensus disorder prediction 531 551 - -
Gso18g0008 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 348 IPR014001 -
Gso18g0008 591 MobiDBLite consensus disorder prediction 1 83 - -
Gso18g0008 591 SMART helicmild6 406 487 IPR001650 -
Gso18g0008 591 CDD DEADc_DDX3_DDX4 130 354 IPR044763 GO:0003724|GO:0005524
Gso18g0008 591 Pfam DEAD/DEAH box helicase 153 337 IPR011545 GO:0003676|GO:0005524
Gso18g0008 591 MobiDBLite consensus disorder prediction 1 27 - -
Gso18g0008 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 526 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0008 Gso-Chr18 112938 117155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0008 113 519 Eukaryotic Initiation Factors Gene Family AT3G19760 30.900 2.89e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0008 K11594 - gmx:100781668 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0008 18 112938 117155 Gso13g1615 13 31363710 31372254 GST