Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0002 ATGGCAGCAAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATATGGAAATCAGATGCCCGTTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACACCCCCAGTAGCAGCAGCATTCCCAATACATCAGAATCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCCTAGAAGACTCAGACAAATAGCCAATGATAATGGTAATCGTGATTATGTTGATGGTGTAGCAGATCATGGTAGAGAAACTGAATATGATCAAGAGTTTGAGTCCATCCTTCGGAGGAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAACTGGACTGGCATCTGAATCATATGAGAATACTGATGGCCATGACCATGACAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCACATGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTATGAGTCAAACCGGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGGGTGATTATTTCACAGGGCCGGGTTTCGATATATTGTTGCAACATTTGGCTGAGAATGATCCTAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTCATAATCAATGAGAATTCGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCCAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTTCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGCTTCAGTTGCCATTGGATGAGTCTAAGCAAGACTCTGATCTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGATGAAGAAAGAGATGGCGAAGGGAGAAATGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCAAACTCTTCATCCTCTTAA 1035 0.4348 MAARYWCHMCSQMVNPIMDMEIRCPFCQSGFVEEMGNTPSSSSIPNTSESDFESDRALSLWAPILLGMMGNPRHPRRLRQIANDNGNRDYVDGVADHGRETEYDQEFESILRRRRNSATILQLLQGIRTGLASESYENTDGHDHDREREREREREHMILINPLNQTIIVQGSYESNRDQSDNHSSVGSLGDYFTGPGFDILLQHLAENDPNRYGTPPAQKEAIEALPTVIINENSQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPLDESKQDSDLSRDSRSQREDESIEHDNDEERDGEGRNASGGRRFSFPWPFNGLFSSSNSSSS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0002 344 MobiDBLite consensus disorder prediction 285 344 - -
Gso18g0002 344 SUPERFAMILY RING/U-box 226 286 - -
Gso18g0002 344 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Gso18g0002 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 283 IPR013083 -
Gso18g0002 344 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 333 - -
Gso18g0002 344 MobiDBLite consensus disorder prediction 285 320 - -
Gso18g0002 344 Pfam zinc-ribbon 4 35 IPR039525 GO:0061630
Gso18g0002 344 SMART ring_2 237 277 IPR001841 -
Gso18g0002 344 Pfam Ring finger domain 236 278 IPR001841 -
Gso18g0002 344 CDD RING-H2_RNF126_like 236 278 - -
Gso18g0002 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0002 Gso-Chr18 53410 55831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0002 99 284 C3H Transcription Factor Family AT1G26800 35.079 5.06e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0002 K11982 - gmx:100784876 646.736