Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2223 ATGAGCTGCTTTTGTACTTCTCGTTCTCGTGGGAAGGATGTGGGCCTTGTTGTTGATAATTTAGGTTTAGGGTCGTCAAATAAAGGCAACAAGAAAGCCTCAGCGACGAGTTTCAGTTTTCGGGAGCTTGCATCGGCAGCGAGTGGTTTTAAGGAAGTGAATTTGATTGGGGAAGGAGGTTTTGGAAAGGTTTACAAGGGTCGTCTTTCTGCTACACTAGGAAGCCAACTTGTTGCTATAAAACAATTACGTCTTGATGGTGAAAGTCACCAAGGTAATCGGGAATTTGTCACCGAGGTTCTTATGTTAAGCCTCCTTCACCATTCCAATCTTGTCAAATTGATTGGCTACTGCACCCATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGTAGCCTCGAAAACCATCTCTTCGATCCTAACCCTAACAAAGAAGCACTAAGTTGGAAAACTCGACTGAACATTGCTGTGGGGGCTGCCCGAGGTCTCCAGTATCTCCATTGTGAAGCGAATCCACCTGTTATCTATCGGGACTTGAAATCTGCCAACATCTTATTAGACTATAATTTAAAACCGAAACTGTCTGATTTTGGGCTTGCTAAACTAGGACCTGTTGGAGACAATACCCATGTTTCCACCAGAGTCATGGGAACATATGGCTACTGTGCCCCCGAGTATGCCATGAGTGGCAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTCGTCTTGCTAGAGTTGATCACTGGACGGAAGGCAATGGATGTCAATAGAAGACCCCGCGAGCAAAGCTTGGTTGCATGGTCTCGCCCATTCTTGAGTGACCGGAGAAAGCTTTCGCATATCGTTGATCCTCGTTTGGAAGGAAACTACCCCTTACGTTGTTTGCACAATGCAATTGCTATTACGGCAATGTGCCTCCAGGAGCAACCGAATCTTCGTCCGTCCATTGGTGATATTGTTGTGGCACTGGAGTACTTGGCCTCTGAAAGAGTTTCTGAAATCATCAGGCATGGTGTGCGCAGCCAACCACGATCAGAAACTGAAACAAATAGCAACTAG 1074 0.4525 MSCFCTSRSRGKDVGLVVDNLGLGSSNKGNKKASATSFSFRELASAASGFKEVNLIGEGGFGKVYKGRLSATLGSQLVAIKQLRLDGESHQGNREFVTEVLMLSLLHHSNLVKLIGYCTHGDQRLLVYEYMPMGSLENHLFDPNPNKEALSWKTRLNIAVGAARGLQYLHCEANPPVIYRDLKSANILLDYNLKPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAMDVNRRPREQSLVAWSRPFLSDRRKLSHIVDPRLEGNYPLRCLHNAIAITAMCLQEQPNLRPSIGDIVVALEYLASERVSEIIRHGVRSQPRSETETNSN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2223 357 ProSiteProfiles Protein kinase domain profile. 50 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2223 357 PIRSF ILK 16 342 - -
Gso17g2223 357 PANTHER OS07G0668900 PROTEIN 29 354 - -
Gso17g2223 357 CDD STKc_IRAK 56 329 - -
Gso17g2223 357 Gene3D Phosphorylase Kinase; domain 1 23 130 - -
Gso17g2223 357 Pfam Protein kinase domain 50 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2223 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Gso17g2223 357 SMART serkin_6 50 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g2223 357 ProSitePatterns Protein kinases ATP-binding region signature. 56 81 IPR017441 GO:0005524
Gso17g2223 357 SUPERFAMILY Protein kinase-like (PK-like) 33 329 IPR011009 -
Gso17g2223 357 Gene3D Transferase(Phosphotransferase) domain 1 131 347 - -
Gso17g2223 357 PANTHER OS07G0668900 PROTEIN 29 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2223 Gso-Chr17 41910867 41912322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2223 34 352 Glycoside Hydrolase AT3G07070 58.567 2.42e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso17g2223 Pkinase 8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2223 - - gmx:100794722 714.916