Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2221 ATGGCGGGTCAGTCCTCCAATGAAGGCTCCAGTACTGGAAACATTTCAGCAGAATGTTCAGATTCAACTGTTCAGCTCAATATCAAGACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCCGTCTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAATCAGCAACGGCTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCACGCTCTTTCTGAGTATTATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGTCGCAGGCTTCTGGTACGAGTTCTGGTGAGTCAACTGGTACAAGTGGTAACCGAGGCTCAGGGGCTCCTCGTAATCATGTTGGGCAAATTTCACACAGTGTTGTTCTTGGAACATTTAATGTGGGCGAACAAGGTGAAGGAATTGTTCATGATCTCACTCGGGTTATTGGGCATGTTTTAAACTCTATTGGAAACGGTGGCCAGAGCACACTTAGTGGTCCTAATGCTACACAAACTTCTTCAGTTCACCCATGGAATGAAACTGAAGGAATGCATGCTGGAAATCAAAACTCAGCAGGAAATCAGGCACCATCTGGACAGACATTTCATGGCCCAACAGTTCAATCTGTCTCTCATGTTGTTCAGATTCCTGTGGCAGCAGGGGCCATACCCATTCCTTCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGTCTGAGTTTATGAATCGCATGGAACAGACACTAACACAAAATGGTTATCAATCAAATCTTTCATCCGCTAACCCTGGAGATCAGCAAGCGGAATTGCCTTCTAATGCACAAGGGTTGCCAACACTTGAAGCATTAAGCACTGTCTTGCATTCCGCAGAACGGTTACTTGGTGGTCAAGCTGTTGCTGCACTATCTCATATTGCAGGGCGCTTGGAAAGAGAAGGAACTTCTGCTGATCTGCGCGTAAGGGATCAAATACAATCAGAGTCAGTGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGTTGACACTGCGTATGGGACAGTCTTCTGCAGAATCTGTTGTTAACACTGGACCAGCAGTTTACATCTCTCCATCAGGGCCAAATCCAATAATGGTGCAGCCTTTTCCATTACAGACAAGCTCCCTCTTTGGTGGTCCAGTTCCCCCCTCAACTCCTGCAACTTTAGGCACCATTGGTATTGGAAATGCTCCTAGGAACGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCTATTGTTTCAGCCATTGGTTCTGGGGCAAATAATGGAGAGGGGACAAGAAGTGAACACCGTAATGAGCCTGGCTCTGGTGATTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCAGCAACTATCCCATCACACCCTCCTGGTGTTGGAATCTCTAGTAGCACACAAACTGGGTTTGGTATTCCTACTTCACAGCCACCTTCTGATTCAGCTTCATTGTCATCTGTTTTAGCAGAAATCAATTCTCGCCTTAGAAACGTTGTTGGTAATATGCATGGAGATAACACAGTTCCATCTGGTCAAATGGAATCAAACAGCAGGGACTTGCCTTCTGGATCTGAATCAAGACCTGCTACAGTAAATGAACAGCGAGATACCATGGACATGAATGGTTTTGGGGCTACTAGTGCTTCCTCAGTTGGCTGCACTTCTGAAAGTGAAGTACAAAAGCTCCAAACTAAGGCAGTCCAAACCTCTAGTAATGATGAGAGAGATGTTTTGGTTGACAAATTTGTTTCAAGTTCTTCCAACCAAGATTTACGAAGTTGTTCTAGTGGAGAAACAATAGTAAAACCAGAAAAAGAACAAGATGTTCCGGCTGTAAGTGAAAGACAAAATGTAACTGAACCTGCCAAAGCTGCTCCGCTAGGATTGGGTGTGGGTGGTTTAGAGCGCAAGAGGAGAACTAGACTTCAACCTCCTGTAAGTAAAGGTGCTGATGATAGATCATCCAGTTCTTCTGCCAATCAAAATCAGCAAACCAGAACAGATGGTCAACATATATTGCAAACTCTTGCAAGTCATGGATCTGGTTTGAATTCAAGAAATGCTAATGGGCCATCCCAGCGGTCCTTGCCCTCCAGTGATCGTCCAATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACGTAGTCCTGCCTTGAATGGTTTGTTGGAAGGAGTTTCTCAGCAAACCGGAGTTGACTCACCTGATGGCTTGAGGAATATGTTGCAGCAGTTCACACAGAGCCCACAGATGATGAACACGGTTAATCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAATGGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCAAGCTCTTGGTGGGGGAAATCCTTCCTCACTATTCTCTGCTGAAGAAGCTGAACCCCATGCACCCTACTGTGATGGAACAATTAACAGAGATGAATATTCTGATAATCAAAGTTTACAGCTTGACCTTCAACCACTGGCTGAGAGGATTGAGCACCTGGGTCCTTCTACTGATATTTTCCGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCAGTGGAAGCACTTCTAATGATCTTCTGGATGAGTTGTGCAGCAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATGTGATGTAAGTAAGCTGCTCAAGGAACATTCTGAGACGAACAATGTCTAA 2811 0.4429 MAGQSSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVDKNMPVSLFKEKIANEIGVPVNQQRLIFRGKVLKDEHALSEYYVENGHTLHLVERQPNQSQASGTSSGESTGTSGNRGSGAPRNHVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTLSGPNATQTSSVHPWNETEGMHAGNQNSAGNQAPSGQTFHGPTVQSVSHVVQIPVAAGAIPIPSLNAPIPDSLNTLSEFMNRMEQTLTQNGYQSNLSSANPGDQQAELPSNAQGLPTLEALSTVLHSAERLLGGQAVAALSHIAGRLEREGTSADLRVRDQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNTGPAVYISPSGPNPIMVQPFPLQTSSLFGGPVPPSTPATLGTIGIGNAPRNVNIHIHAGTSLAPIVSAIGSGANNGEGTRSEHRNEPGSGDSGSTRVLPVRNVIAATIPSHPPGVGISSSTQTGFGIPTSQPPSDSASLSSVLAEINSRLRNVVGNMHGDNTVPSGQMESNSRDLPSGSESRPATVNEQRDTMDMNGFGATSASSVGCTSESEVQKLQTKAVQTSSNDERDVLVDKFVSSSSNQDLRSCSSGETIVKPEKEQDVPAVSERQNVTEPAKAAPLGLGVGGLERKRRTRLQPPVSKGADDRSSSSSANQNQQTRTDGQHILQTLASHGSGLNSRNANGPSQRSLPSSDRPIDVAGLMSQALRSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIVQQVGSQDVGNMFAGMERGQGGGIDISRMFQQMMPIVSQALGGGNPSSLFSAEEAEPHAPYCDGTINRDEYSDNQSLQLDLQPLAERIEHLGPSTDIFRAVAENAVQLSGSGSTSNDLLDELCSNESLAREYVDMLRCDVSKLLKEHSETNNV* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2221 936 PRINTS Ubiquitin signature 55 75 IPR019956 -
Gso17g2221 936 PRINTS Ubiquitin signature 76 97 IPR019956 -
Gso17g2221 936 Gene3D - 13 108 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 165 211 - -
Gso17g2221 936 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Gso17g2221 936 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Gso17g2221 936 MobiDBLite consensus disorder prediction 526 557 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 479 508 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 608 622 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 608 693 - -
Gso17g2221 936 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
Gso17g2221 936 CDD Ubl_ubiquitin_like 26 93 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 706 728 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 444 467 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 95 126 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 675 693 - -
Gso17g2221 936 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 4 933 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 706 725 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 563 582 - -
Gso17g2221 936 MobiDBLite consensus disorder prediction 484 508 - -
Gso17g2221 936 PANTHER OS07G0498800 PROTEIN 4 933 - -
Gso17g2221 936 SMART ubq_7 24 95 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2221 Gso-Chr17 41891170 41901556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2221 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.33e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2221 - - gmx:100783611 1762.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1890 14 51341953 51356354 Gso17g2221 17 41891170 41901556 GST