Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2220 ATGACGCTCAACATAGCGGCTTTGGCTGTGTTGTGTATTTCTGTCTTTGGCATCGCTGTGGTGGCTGAAGATCCATATAGGTTCTTCACCTGGAATGTTACATACGGAGACATTTATCCACTTGGTGTTCGCCAACAGGGAATACTTATCAACGGTCAATTCCCAGGTCCAGACATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAACAGCTTGGACCAGCCATTTCTCCTCTCCTGGAACGGAGTCCAGCAGAGAAGGAACTCATTCGAAGATGGGGTATTGGGAACAACATGCCCCATCCCAGCAGGAGGGAACTTCACATACATACTTCAAGTGAAGGATCAAATTGGAAGCTTCTACTACTTCCCATCCCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGCATTAGGATTTTGAGCAGGCCTAGAATTCCAGTTCCTTTCGATGATCCTGCCGGTGATTACACTGTCCTCATTGGAGATTGGTACAAGCTCAACCACACGGATTTGAAGTCTCAGCTTGATAGCGGTAGGAAGCTGCCTTTACCTGATGGAATCCTAATCAATGGTCGTGGCTCTAATGGAGCATATTTAAATGTGGAACAAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGGTTGGAAAATTCGCTGAACTTGCGCATACAAAACCACAAATTAAAGCTGGTGGAAGTGGAAGGGACACACACCCTTCAAACTACGTACTCATCCCTTGACGTCCACGTGGGCCAATCTTACTCAGTTCTGGTAACTGCGGATCAACCTGCTCAGGACTACTACATTGTGGTCTCCTCTCGATTTACCTCCACAGTTCTCACCACCACCGGAATTCTGCGCTATAGCAACTCTGCAGGCCCAGTTTCAGGCCCACCCCCTGGTGGACCTACCATCCAAATTGATTGGTCTTTGAACCAGGCCCGCTCCATCAGGACCAACCTCACAGCAAGTGGGCCTAGGCCCAACCCGCAAGGCTCCTACCATTACGGTCTCATAAACACAACCAGGACCATCATACTGTCGGGTTCACCAGGTATAGTGAATGGCAAACAAAGATACGCAATTAATAGCGTGTCTTACGTTGCTCCGGACACTCCTCTTAAGCTCGCCGACTACTTCAAAATCCCTGGCGTTTTCCGTGTGGGAAGCATTTCTGACAGGCCCACTGGCGGTGGCATATACCTTGACACATCTGTGCTGCAAACTGACTACAGAACATTTGTGGAGTTTGTCTTCCAAAATGACGAAGATATCATTCAGAGCTATCATCTCGATGGCTACTCTTTCTTTGTGGTTGGTATGGATGGAGGACAGTGGACACCTGCTAGCAGGAACACGTACAATCTTCGAGATGCAGTTTCGCGGTCCACAACTCAGGTATATCCCAAGTCATGGACTGCTATATATATTGCGCTTGACAACGTGGGAATGTGGAACTTGAGGTCTGAATTTTGGGCACGGCAATACCTTGGCCAACAGTTTTACATGCGCGTTTATACAACATCGACCTCAATCAGAGATGAATATCCTGTTCCGAAGAATGCACTACTTTGTGGTAGGGCAAGTGGGAGACACACTCGACCCCTTTGA 1626 0.4766 MTLNIAALAVLCISVFGIAVVAEDPYRFFTWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDQPFLLSWNGVQQRRNSFEDGVLGTTCPIPAGGNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTVLIGDWYKLNHTDLKSQLDSGRKLPLPDGILINGRGSNGAYLNVEQGKTYRLRISNVGLENSLNLRIQNHKLKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAQDYYIVVSSRFTSTVLTTTGILRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTTRTIILSGSPGIVNGKQRYAINSVSYVAPDTPLKLADYFKIPGVFRVGSISDRPTGGGIYLDTSVLQTDYRTFVEFVFQNDEDIIQSYHLDGYSFFVVGMDGGQWTPASRNTYNLRDAVSRSTTQVYPKSWTAIYIALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHTRPL* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2220 541 Pfam Multicopper oxidase 378 513 IPR011706 GO:0005507|GO:0016491
Gso17g2220 541 Gene3D - 156 332 IPR008972 -
Gso17g2220 541 SUPERFAMILY Cupredoxins 153 333 IPR008972 -
Gso17g2220 541 PANTHER - 13 534 - -
Gso17g2220 541 Gene3D - 26 147 IPR008972 -
Gso17g2220 541 CDD CuRO_3_AAO_like_1 375 495 IPR034275 GO:0005507
Gso17g2220 541 CDD CuRO_1_AAO_like_1 28 143 IPR034273 GO:0005507
Gso17g2220 541 SUPERFAMILY Cupredoxins 19 173 IPR008972 -
Gso17g2220 541 PANTHER MULTI-COPPER OXIDASE 13 534 IPR045087 -
Gso17g2220 541 Pfam Multicopper oxidase 33 146 IPR011707 GO:0005507
Gso17g2220 541 Pfam Multicopper oxidase 159 295 IPR001117 -
Gso17g2220 541 Gene3D - 342 537 IPR008972 -
Gso17g2220 541 SUPERFAMILY Cupredoxins 343 532 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2220 Gso-Chr17 41879866 41886710 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2220 - - gmx:100783077 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1889 14 51326088 51330999 Gso17g2220 17 41879866 41886710 GST
Gso17g2220 17 41879866 41886710 Gso4g0174 4 1528255 1536331 PCT
Gso17g2220 17 41879866 41886710 Gso6g0161 6 1494872 1502444 PCT
Gso4g0174 4 1528255 1536331 Gso17g2220 17 41879866 41886710 PCT
Gso6g0161 6 1494872 1502444 Gso17g2220 17 41879866 41886710 PCT