Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2213 ATGCTCGGTTCCGTTCTTCTGGCGGTTTTCTTGCCGTGCATCGGCATGAGCGCCGCTTTGATCGTGTACATGTGCCTTCTCTACTACTTCACCGACCACTTCTCCGACCCCGCGCTACCGGCCAAGCCAGCCTCCGACAGCGGGCTCTCCCCTTCCCAGCTCGACAAGCTACCCAGAATCACCGGAAAGGAACTTGTGATGGGAAACGAATGCGCCGTCTGCCTGGACCATATCGGAACAGAGCAACCGGCTCGGCTGGTTCCCGGTTGCAACCACGCCTTCCATTTGGAATGCGCCGACACCTGGCTCTCCGAGCACCCTCTCTGCCCTCTCTGCAGAGCCAAACTCGACCCAGCGCTTTTCTCTTCCTCCCAAAATCCATGCTGA 387 0.5891 MLGSVLLAVFLPCIGMSAALIVYMCLLYYFTDHFSDPALPAKPASDSGLSPSQLDKLPRITGKELVMGNECAVCLDHIGTEQPARLVPGCNHAFHLECADTWLSEHPLCPLCRAKLDPALFSSSQNPC* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2213 128 SUPERFAMILY RING/U-box 55 119 - -
Gso17g2213 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Gso17g2213 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Gso17g2213 128 SMART ring_2 71 112 IPR001841 -
Gso17g2213 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 119 IPR013083 -
Gso17g2213 128 Pfam Ring finger domain 69 113 IPR001841 -
Gso17g2213 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2213 Gso-Chr17 41822867 41823586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2213 1 128 C3H Transcription Factor Family AT5G42200 46.324 1.94e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2213 K19037 - gmx:100780203 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1876 14 51183897 51185032 Gso17g2213 17 41822867 41823586 GST
Gso17g2213 17 41822867 41823586 Gso4g0189 4 1673774 1675141 PCT
Gso17g2213 17 41822867 41823586 Gso6g0172 6 1617637 1618670 PCT
Gso4g0189 4 1673774 1675141 Gso17g2213 17 41822867 41823586 PCT
Gso6g0172 6 1617637 1618670 Gso17g2213 17 41822867 41823586 PCT