LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g2211	ATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA	1473	0.4481	MSEDVEMKDQATPSHSLSSVPPSALQHLKEIASIIETGSYSKEVRRIARALRLTFALRRKLTAPVLSSFLDYVLPPASEPHTRLSSFLPNPKEGDREMEVDSSTSTIQTPAAKHLLPELEIYCYLLVLLFLIDQKRYDTAKACSSASIVRLKSLNRRTVNVIASRLYFYYSYSYELTGNLAEIRGNLLALHRIATLRHDELGQETLLNLLLHNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKDLLLQAARKAPSAAQGFQIQCNKWAVIVRLLLGEIPERIIFMHRGMEKSLRPYFELTNAVRIGDLELFRNATEKFGTTFSRDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADSESIVAKAIRDGAIDASLDHANGWMVSKGTGDIYSTNEPQLALNSRIAFCLNMYNEAVRALRFPPNKDKEKENAEKRRERHQQEQELAKHIAEEDDDDF*	491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g2211	490	SUPERFAMILY	"Winged helix" DNA-binding domain	349	423	IPR036390	-
	Gso17g2211	490	SMART	PINT_4	348	441	IPR000717	-
	Gso17g2211	490	PANTHER	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	1	490	-	-
	Gso17g2211	490	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	348	441	-	-
	Gso17g2211	490	MobiDBLite	consensus disorder prediction	454	483	-	-
	Gso17g2211	490	Coils	Coil	457	484	-	-
	Gso17g2211	490	MobiDBLite	consensus disorder prediction	454	490	-	-
	Gso17g2211	490	Gene3D	-	247	419	-	-
	Gso17g2211	490	PANTHER	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3	1	490	-	-
	Gso17g2211	490	Pfam	PCI domain	314	419	IPR000717	-
	Gso17g2211	490	ProSiteProfiles	PCI domain profile.	242	423	IPR000717	-
	Gso17g2211	490	MobiDBLite	consensus disorder prediction	1	22	-	-
	Gso17g2211	490	Pfam	Proteasome regulatory subunit C-terminal	423	489	IPR013586	GO:0000502\|GO:0030234\|GO:0042176

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g2211	Gso-Chr17	41808284	41813620	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g2211	K03033		-	gmx:100779667	910.983

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso14g1874	14	51157800	51163160	Gso17g2211	17	41808284	41813620	GST
	Gso17g2211	17	41808284	41813620	Gso4g0192	4	1693912	1697242	PCT
	Gso17g2211	17	41808284	41813620	Gso6g0173	6	1629840	1633230	PCT
	Gso4g0192	4	1693912	1697242	Gso17g2211	17	41808284	41813620	PCT
	Gso6g0173	6	1629840	1633230	Gso17g2211	17	41808284	41813620	PCT