Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2206 ATGGTCACTGCTGCTAAATCTTCAAACCACCATTCGCCGCCCAGTGCTCCGTCACCGGCGCAGCCCAGCGACGCCAACAGCCCTAAGTTCAGGCGCAAAAATCTTCCCTCCCCGTGGGTTCAGCTTGTTCACGGTGGCGAGCCCCAACCGGGGAGCGGCATTCACCAATCGCCGCCGTCATCGTCGTCCTCGTCCTCGTCTCTGGTTGCTGACCAAGCCCCAGAGGTGGATAATTCTAATACGGTTGGTGATGTAGATAGTTCCGATGGCGCTGAGGGCAATGCGGATCGTTCTAAAAAGCTCGTTTGGAACAAGCCCTCAAACGGCGTTGTCGTCGAGACTGGGCCTGTAATGGGCGCTGCTGAATCATGGCCCACTTTGCTTGCGTCCACCAAAGGTTCTGCTAAATTGCCTCCTGAATCGTCCTCCAATACTGTTATCGATTATGGATCACTCTCCACTTCTCCTCAGGGGCCAATGGCTTCACAATCTCCTCAGAAACAAGCGACCACTAATGCAAAACCTAATTCTGCTCCAAATTATAATGTGCCTGGTAGACAAAGATCAATGAAGCGGGTAGGTGGCAGCAGCAGCACTGTGTCTGATCCTTCACAGGGCAACTTCTCTAACCCTCCCCCACCACCGCCGCCCCCGCCTTTTCCTGTATACCAGCTCCCACCAGTTAGCTATTGTAATATGGTACCAGGGGTCCCTGACCCTGCTCCAAGAGATCATTACCGGAACAATAACTGGGATGCAGGACCAATGGTAGGGGGTTTTGTGCCTGCCATGAATGGATATCGGGGTTCCTCTCGCAGGGGTTATTTTGGGCCTCATCCCCGAGGAGATGGTTCCTATCATAATAGTTATGGTAGCCGGCGTGATCATCAAGATCGTGGAAATTATGTGAATACTAGAGATGCATTTGTTCCTCAACCAAGGATGCCTCCAAGAGGATTACCGAGACACACACCACCACCTACTACTGCTGCTGCATTTGTGGGACCTCAGCCTATTGGACCATTTGCTAAACCCATTGGTTTTCCTGAGTTTTATTACTACCAACCAGTAACAGTGGAACAGTTTACGGGTATGTCGTTCTTCGCTCACAGCCCTCCTCCTACACCGTTCTTCTCTGCTGCAGAATCTCCTCTCTCTAATATGATAGTCTATCAAATTGAATATTACTTTAGTGATGCTAATTTAGTGAAAGATGCGTTTTTAAGGTCTAAAATGGATGAACAAGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAAAAGTTTGACAACCAACATTCAGTTGATACTCGATTCGATCAGGACTTCTGCTATCGTGGAAGTGCAAGGTGACAAGCTAAGGAGACTTAACGAGTGGAAAAGATGGTTGTCCTCTACTCAGCGAGGTTCAACATCTCCCATTGGATCAAGATACAATAACCTTACAACTAATCTTCAAACCATCAAATTGGAAGAAACAATTAAAGATGAAGATCCAAGAATGTCAAATGGTGGTGATGCTACCGGGAGCAGCAGTGGAAACAACTAA 1557 0.4843 MVTAAKSSNHHSPPSAPSPAQPSDANSPKFRRKNLPSPWVQLVHGGEPQPGSGIHQSPPSSSSSSSSLVADQAPEVDNSNTVGDVDSSDGAEGNADRSKKLVWNKPSNGVVVETGPVMGAAESWPTLLASTKGSAKLPPESSSNTVIDYGSLSTSPQGPMASQSPQKQATTNAKPNSAPNYNVPGRQRSMKRVGGSSSTVSDPSQGNFSNPPPPPPPPPFPVYQLPPVSYCNMVPGVPDPAPRDHYRNNNWDAGPMVGGFVPAMNGYRGSSRRGYFGPHPRGDGSYHNSYGSRRDHQDRGNYVNTRDAFVPQPRMPPRGLPRHTPPPTTAAAFVGPQPIGPFAKPIGFPEFYYYQPVTVEQFTGMSFFAHSPPPTPFFSAAESPLSNMIVYQIEYYFSDANLVKDAFLRSKMDEQGWVPVTLIADFPRVKSLTTNIQLILDSIRTSAIVEVQGDKLRRLNEWKRWLSSTQRGSTSPIGSRYNNLTTNLQTIKLEETIKDEDPRMSNGGDATGSSSGNN* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2206 518 MobiDBLite consensus disorder prediction 191 206 - -
Gso17g2206 518 MobiDBLite consensus disorder prediction 496 518 - -
Gso17g2206 518 ProSiteProfiles La-type HTH domain profile. 379 468 IPR006630 -
Gso17g2206 518 PANTHER LUPUS LA PROTEIN-RELATED 6 512 IPR045180 -
Gso17g2206 518 MobiDBLite consensus disorder prediction 53 87 - -
Gso17g2206 518 MobiDBLite consensus disorder prediction 1 116 - -
Gso17g2206 518 Gene3D - 379 469 IPR036388 -
Gso17g2206 518 SMART la 383 459 IPR006630 -
Gso17g2206 518 PANTHER LA-RELATED PROTEIN 1B 6 512 - -
Gso17g2206 518 MobiDBLite consensus disorder prediction 131 221 - -
Gso17g2206 518 MobiDBLite consensus disorder prediction 207 221 - -
Gso17g2206 518 MobiDBLite consensus disorder prediction 131 184 - -
Gso17g2206 518 CDD LAM 387 458 - -
Gso17g2206 518 Pfam La domain 389 444 IPR006630 -
Gso17g2206 518 SUPERFAMILY "Winged helix" DNA-binding domain 379 467 IPR036390 -
Gso17g2206 518 MobiDBLite consensus disorder prediction 275 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2206 Gso-Chr17 41777344 41781685 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2206 K18757 - gmx:100778603 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1869 14 51117224 51121678 Gso17g2206 17 41777344 41781685 GST
Gso17g2206 17 41777344 41781685 Gso4g0196 4 1723409 1729107 PCT
Gso17g2206 17 41777344 41781685 Gso6g0177 6 1650636 1655373 PCT
Gso4g0196 4 1723409 1729107 Gso17g2206 17 41777344 41781685 PCT
Gso6g0177 6 1650636 1655373 Gso17g2206 17 41777344 41781685 PCT