Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2197 ATGGCAGAAGTGGAACTAGCCCCAGATTCACGTTTAGAACAAAATGTATCATCTAAAATAGACCAACAAACCAAAACCGAGAGTGTTTCGTTTTTTGGCTTGTTTGCTACAGCTGATGCAACTGACTGTGTCTTGATGTTCCTCGGATGCTTTGGTTCGTGTGTCCATGGCGCTGCTCTTCCTGTTTTCTTCATTTTGTTCGGTCGCATGATCGACTCTTTGGGACATCTTTCTAATGATCCTCACAAATTGTCCTCACGAGTTTCTGAGCATGCTTTGTATTTGGTCTATCTTGGAGGAGTTGTTCTGGTATCAGCTTGGATGGGTGTTGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCACGTTTGCGCTTGAAATATTTGCAGGCAGTGCTAAAGAAGGATATTAATTTCTTTGACAATGAAGCCAGGGATGCTAATATTATTTTCCACATCTCTAGTGACGCAATATTGGTACAAGATGCAATTGGAGACAAGACGGGCCATGCCATTCGTTACCTTTCTCAATTCATTGTTGGATTTGCCATTGGATTTACCTCGGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCATTAATAGCTGTAGCTGGGGGAGCTTATACAATAATTATGTCTACTTTATCAGAAAAGGGCGAAGCAGCTTATGCTGAAGCTGGAAAGGTTGCACAAGAGGTAATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTGGTTCATACTCAAAATCACTTGATAATGCTCTGAAGTTGGGCAAGAAGGGTGGTTTAGCAAAAGGAATTGGAGTAGGCTTCACATATGGGTTGTTATTTTGTGCTTGGGCATTGCTTCTATGGTATGCTAGCATACTAGTGAGGAATCATAAGACAAATGGAGGCAAAGCGTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATAGCCAAAGGGCGTGCCGCTGCAGGCAATATCATGAACATGATTGCGTCCACTTCAAGAAATTCTAAAAAGTTTGATGATGGTAATGTTGTCCCACAAGTAGCAGGGGAAATTGAATTTTGTGAGGTCTGCTTTGCTTACCCCTCAAGATCCAATATGATCTTTGAAAAATTGAGCTTCTCAGTGAGTGCTGGGAAGACCATAGCAATTGTAGGTCCAAGTGGTTCCGGAAAGAGCACGATTGTTTCGCTAATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACCTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGCTTGGTTAGTCAAGAACCAGCACTATTTGCAACAACAATAGCTGGAAATATTTTATTTGGAAAAGAAGATGCAGACATGGATAAAGTCATACAAGCTGCCATGGCTGCAAATGCTCATTCTTTCATTCAAGGATTACCTGATGGTTATCAAACTCAGGTTGGAGAAGGTGGCACCCAACTTTCAGGGGGCCAAAAGCAAAGAATTGCCATAGCAAGAGCAGTGCTAAGAAACCCAAAAGTATTGCTTTTAGATGAGGCAACAAGTGCTCTAGATGCTGAATCGGAGCTCATTGTCCAACAGGCATTGGAAAAAATAATGTCAAACAGAACAACAATAGTTGTTGCTCATAGATTATCCACCATACGCGATGTAGATACAATTGTTGTGTTGAAGAACGGCCAGGTGGTTGAAAGTGGGACTCATTTGGAATTGATGTCCAACAACGGGGAGTATGTGAATCTGGTGAGTTTGCAGGCATCACAAAACCTCACAAACTCTAGATCAATATCTCGCTCCGAAAGTTCAAGAAATTCTAGTTTTAGAGAACCTTCAGACAACCTGACCTTAGAGGAGCAGTTGAAGTTGGATGCAGCAGCAGAACTGCAATCAAGAGATCAACACTTGCCATCAAAGACTACTTCCACTCCATCAATTTTGGATTTACTGAAACTGAATGCTCCAGAGTGGCCCTATGCAATACTTGGGTCAGTAGGTGCAATATTGGCTGGCATGGAAGCCCCTCTCTTTGCTCTTGGAATCACTCACATTTTGACTGCATTTTATTCTCCTCAGGGTTCTAAAATCAAGCAAGAAGTTGATCGGGTTGCTTTTATATTTCTTGGAGTAGCTGTTATTACTATACCTATTTATCTATTACTACACTACTTCTATACACTGATGGGAGAGCGTCTCACTGCCCGTGTGCGTTTATTAATGTTCTCAGCTATTCTCAACAATGAAGTTGCATGGTTTGATAAGGATGAGAACAACACTGGCTCACTAACGGCCATGCTAGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGACTCTCAACCATTGTTCAAAATGTAGCTCTCACTGTAACAGCTTTTGTTATTGGTTTCACATTGAGTTGGAAACTAACGGCAGTGGTCGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAACTATTTCTCAAGGGGTTTGGAGGAGACTATGGCCATGCTTACTCTAGAGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATTCGTACCGTTGCTGCTTTTGGCGCAGAAGATCGAGTCTCAACCCAGTTTGCATCTGAACTGAACAAACCCAACAAACAAGCACTTCTACGTGGCCACATATCAGGTTTTGGCTATGGCATAACACAGCTATTGGCCTTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAGTTTTAATCAAGAAGAATGAGTCAAATTTTGGAGACATTATGAAGTCCTTCATGGTCTTAATCATCACTTCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATTGTGAAGGGATCACAAGCACTAGGATCAGTTTTTGGCATTATCCAAAGGAGAACAGCCATCACCCCAAATGACACCAACTCAAAGATTGTAACTGATGTCAAAGGAGAGATAGAGTTTAGAAATGTTAGCTTCAAGTACCCTATGAGACCTGACATCACCATATTTCAGAACTTAAACCTCAGAGTCCCAGCAGGCAAGAGTCTGGCAGTAGTGGGGCAAAGTGGTTCAGGAAAAAGCACAGTGATTTCTTTGGTAATGAGATTTTATGACCCCGATTCGGGGTTAGTCCTGGTAGATGAATGTGATATCAAAAACCTAAACCTGAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCTACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCAGCCAAAGCAGCAAATGCTCATGAATTCATCAGCAGAATGCCAGAAGGGTACAAAACCGAGGTTGGTGAGAGAGGGGTGCAGTTGTCAGGAGGACAAAAACAAAGAGTGGCAATTGCTAGAGCTATCCTGAAAGATCCATCCATTCTTTTGTTGGACGAAGCAACAAGTGCACTTGACACAGTATCAGAGAGGCTAGTCCAAGAGGCTCTTGATAAACTTATGGAAGGTAGAACAACTATTTTGGTAGCTCACAGGTTATCAACTGTTCGCGATGCCAACAGCATTGCAGTGCTTCAAAATGGCAGGGTTGCTGAAATGGGGAGCCATGAGAGGCTGATGGCCAAATCCGGAAGCATCTACAAGCAATTGGTTAGTCTACAGCATGAAACACGCGACCAAGAAGATCATTGA 3753 0.4279 MAEVELAPDSRLEQNVSSKIDQQTKTESVSFFGLFATADATDCVLMFLGCFGSCVHGAALPVFFILFGRMIDSLGHLSNDPHKLSSRVSEHALYLVYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYAEAGKVAQEVISQVRTVYSFVGEEKAVGSYSKSLDNALKLGKKGGLAKGIGVGFTYGLLFCAWALLLWYASILVRNHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAGNIMNMIASTSRNSKKFDDGNVVPQVAGEIEFCEVCFAYPSRSNMIFEKLSFSVSAGKTIAIVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDAESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSNNGEYVNLVSLQASQNLTNSRSISRSESSRNSSFREPSDNLTLEEQLKLDAAAELQSRDQHLPSKTTSTPSILDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHILTAFYSPQGSKIKQEVDRVAFIFLGVAVITIPIYLLLHYFYTLMGERLTARVRLLMFSAILNNEVAWFDKDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYGHAYSRATSLAREAIANIRTVAAFGAEDRVSTQFASELNKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKNESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFGIIQRRTAITPNDTNSKIVTDVKGEIEFRNVSFKYPMRPDITIFQNLNLRVPAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGLVLVDECDIKNLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYKTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDANSIAVLQNGRVAEMGSHERLMAKSGSIYKQLVSLQHETRDQEDH* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2197 1250 Gene3D - 361 616 IPR027417 -
Gso17g2197 1250 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524
Gso17g2197 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 476 566 - -
Gso17g2197 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 30 471 - -
Gso17g2197 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 548 1241 - -
Gso17g2197 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 605 IPR003439 GO:0005524
Gso17g2197 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Gso17g2197 1250 CDD ABC_MTABC3_MDL1_MDL2 370 606 - -
Gso17g2197 1250 MobiDBLite consensus disorder prediction 614 634 - -
Gso17g2197 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 30 471 IPR039421 -
Gso17g2197 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 476 566 IPR039421 -
Gso17g2197 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 548 1241 IPR039421 -
Gso17g2197 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g2197 1250 CDD ABC_MTABC3_MDL1_MDL2 1003 1241 - -
Gso17g2197 1250 Gene3D - 1001 1248 IPR027417 -
Gso17g2197 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g2197 1250 SUPERFAMILY ABC transporter transmembrane region 669 981 IPR036640 GO:0005524|GO:0016021
Gso17g2197 1250 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Gso17g2197 1250 SUPERFAMILY ABC transporter transmembrane region 42 343 IPR036640 GO:0005524|GO:0016021
Gso17g2197 1250 Pfam ABC transporter transmembrane region 46 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g2197 1250 Pfam ABC transporter transmembrane region 682 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g2197 1250 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Gso17g2197 1250 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Gso17g2197 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Gso17g2197 1250 SMART AAA_5 396 582 IPR003593 -
Gso17g2197 1250 SMART AAA_5 1030 1218 IPR003593 -
Gso17g2197 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Gso17g2197 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1241 IPR027417 -
Gso17g2197 1250 Gene3D ABC transporter type 1, transmembrane domain 19 348 IPR036640 GO:0005524|GO:0016021
Gso17g2197 1250 Gene3D ABC transporter type 1, transmembrane domain 857 1000 IPR036640 GO:0005524|GO:0016021
Gso17g2197 1250 Gene3D ABC transporter type 1, transmembrane domain 622 841 IPR036640 GO:0005524|GO:0016021
Gso17g2197 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 606 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2197 Gso-Chr17 41680429 41685958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2197 22 1247 Calmodulin-binding Proteins AT2G36910 49.321 0.0 1209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2197 K05658 - gmx:100788391 2347.39