Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2195 ATGACTCTTGAAGATTTCTTTACGTTGACTGAAATGAAAGATGGCCTCATGGCCCCTTCTCGAGTGCAAGAGTTGGTCTCTGTAATGAAGAAGGAGCAAGATTGTGTTGCTAAGAATGCTGGTGATACAACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATTTTTTTATTAAATTAGATGGACTTGGGTTCATCAACAAATGGTTAAAGGATACCCTGAATTTGGGTGCTGATAATACTAATGATGGCTTCATTGAAGAGTCAATTACTGCAATGTTACGTGCAATTGAAAAACTGTATCTAGACAGCGAGAAATCAATTTCATCAGGAATTTCTGTGACTGTAAGTAACCTTCTTGGTCATCGTAGCTCTAAGGTGCAGGATAGAGCAAGAGTATTATTTGACCGCTGGAAAGGAGGTGGAGATGGAGATGCTGAACCAACTGATAATTCGGATCTTGGTAGAATCAACAATGTGAGTGATGAAATTGTCAGTGAGAAAGGCCAACCATCTTCTGTGAATGAAGCTGGCAATGAAGATGATCATGTATCTCAACCTGCTGGAGGTGAGAAGTCTCTACTGGGAGGCTCAGATAGTCAGCTACAAGAAAAAGTTTCTAGCATACAGATACAGAGTGCTGACAATGCACTCCAGTCCTCTGTAAGGTTGGATTGTGAAGATGCCAAAGAGAGATCAAACCATGTTGATAGTGTTTTGGCTTCTGTTCAAGAAGTTGCTAACATAAATGAAGGCGGCACCACATCGGCTGGGACCTGTAACTTACCTGTTAATAAACAAGACAGTTTCAAAGGTCAACAAGATGATTTAGAGTTAAATGACTTGTCCAAAAAGGAGATGCAAGATGAAAATGTTAATGATCCTCCAGAAGAATTAAGAGCATCAGATATCTCTTTGGCATCTGCAAAGCCAGAACCTGAACCTGTCTCCATTGGTGATAGTGAAGCAAAAGCACTGGAATCTGTGAAAGAAGAACCTGCTTTAGAACATAACGCTGAAAGCAATGAAAATATCATTTGTCCTAAAATAAATGTTTCTGGTAGCATGAGAACACCTGCGTCAGATGGGATAAGTGTGGGAGATGATGTCAGAGCTATAAATTCCAGCAATCCACAACTTCCCAAAGCATCAGAAAATGATGACTGTTGTTCTCAAGCATTGCAGGACTTATCAGTCACTAGCAGTCACTTGGAAAAGCCTGAGATGTCTTTCCTCAAAACACAATATGTAGGAGCAGTTAAGGAAAGCAAGGGCCAAGAGTCTGATCAAGATGATGATACCTCAGATGGTTCTGACTCTTCTAACCAGGGTAAAGGTCCCACAAGCCCTAACATTATTGACAAGAATTCTGACATGGAACTTGAGTATGGTATTGTTGATGCTTTAGAAGTTGCTCGACTAGTTGCCCAGGAAGTTGAGAGGGAATGTGTCAGCCCTATAAAGCAAGGGCATGGCCAAGTTTCTTATAAAGTCAACAGTACCACAAATGGTTCTGATTCTTTTAAATGGGGAAATGGCCCCAAAAGCCCTAATGTTATTGACAAGAGTTCTGATATTGAACTTGAGTATGGTATTGTTGATGCTTTAGAAGTTGCCCGACAAGTTGCTCAGGAGGTTGAGAGAGAAGTTTGCAGCTCTTCTTCAGAGAAAATCTCAGAAGGTGGAATCAGGCAGGCAGCCAGCCCTGATTTTGTAGGGAGAAAGGATGAAGTCACTCGTGTCCTACATGAGGAGGTATCATCCAGGCAAAGCAACTCTGATGAGGTGTGTTCTGAAGAGGCAGGACATATGAGTGTTTCCGATAATATTGAGGCTGGGCAAGATGACTTGGAGTCCTCGCAGGTGACTGAAGCAGCTCGAGACCCAGGAGGTAACTCAGAGAAAAGTCTCTGTACCTTTGATCTCAATGAAGAAGTTGGTTCTGATGATATGGATGTTTCTGTGAATGCCATGTCTACTATGCCAATACCAGTTGTTTCTGCTTCAAAACCTGCACTGACTTCTTGGTTGCCAATGGCCCCTTTGCAGTTTGAGGGGACCCTTGGATGGAAAGGATCAGCTGCCACCAGCGCCTTTCGTCCTGCATCTCCTCGTAAAAATTCTGATAATGAGAAGAATGTTTCTGTTGGTGGAAACTCCTCAGAGATTTCCAAGCAGAGGCAGGATTGCCTTGATTTTGATCTGAATGTGGCTGAGGGTGAAGAAGGACTGCTAAAACAAATTGGTGAATCTTCAGGCCTTCCTTCTGGCCAATCATCAGTGGAACTTAGTCCTAAAAGATCAAGCAGGTTCAAATTGGATTTAAATAGTATCGGTGATGATGGTGATGCCCAACCTTCAGATCAGAGGATGGAGGGGCCACTTTTTCCCAGAAGAAATGGTTATTGGAGCCCATCACCTGCTTCATCGTCATCATCAATGCAACCTTTAGTACGAAACATTGATCTGAATGACAGACCATTCTTTCAAACCGATTTAGTGGACCAAGGGCTTAGTAAGTCATCTTCGATTATTGAAGCATATAAACAATCCAAGTCGGATGCTCCTGTGATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTACAAGAGAATATATTCCTCAAACTTTGTCTTTTCCAAATGGCAAGGCTATTGAGCCTGCAATGGATCTTCCATTGTCAGGAGCAGGTAGCGTTTTAGGAATGGGCCCCACACTATCCTACAATCATTCAACTGCTTTTGGGTACAACGGACTGACATCAGTGCCTGCTTTATCTTTTTCACCAGCCATGTATGGATCACCTGGTGGCCCAATTCCATACATGGTAGACTCAAGAGGAAGTCCAGTCGTGCCTCAGGTTGGGGGATCTTCCTCAACTGCCCTGTCATCTTATTCTCAACCTCCATTTATCGTGAGCATTACCGGTACACAGCTTGGTTTAAATGGGGTTGGATCTTCACGCCCCAACTTTGATCTGAACTCTGGCTTCACGATTGATGGAGGGAACAGAGACATGTTGACTGCAAGGCAATTTTTCTTTCCTGCTCAAGGCAGAGCTATGGAGGATCATGTGAGGACCCTTCCACAATCCTCAAGTTCTGGAGTTAGTGTGAAAAGAAAGGAACCAGATGGTGGCTGGGATACCTATCCTCTTAGCTACAAACATCAGCAACCTCCATGGAAGTAG 3216 0.4322 MTLEDFFTLTEMKDGLMAPSRVQELVSVMKKEQDCVAKNAGDTTRQWAAVASTIAATENKDCLDFFIKLDGLGFINKWLKDTLNLGADNTNDGFIEESITAMLRAIEKLYLDSEKSISSGISVTVSNLLGHRSSKVQDRARVLFDRWKGGGDGDAEPTDNSDLGRINNVSDEIVSEKGQPSSVNEAGNEDDHVSQPAGGEKSLLGGSDSQLQEKVSSIQIQSADNALQSSVRLDCEDAKERSNHVDSVLASVQEVANINEGGTTSAGTCNLPVNKQDSFKGQQDDLELNDLSKKEMQDENVNDPPEELRASDISLASAKPEPEPVSIGDSEAKALESVKEEPALEHNAESNENIICPKINVSGSMRTPASDGISVGDDVRAINSSNPQLPKASENDDCCSQALQDLSVTSSHLEKPEMSFLKTQYVGAVKESKGQESDQDDDTSDGSDSSNQGKGPTSPNIIDKNSDMELEYGIVDALEVARLVAQEVERECVSPIKQGHGQVSYKVNSTTNGSDSFKWGNGPKSPNVIDKSSDIELEYGIVDALEVARQVAQEVEREVCSSSSEKISEGGIRQAASPDFVGRKDEVTRVLHEEVSSRQSNSDEVCSEEAGHMSVSDNIEAGQDDLESSQVTEAARDPGGNSEKSLCTFDLNEEVGSDDMDVSVNAMSTMPIPVVSASKPALTSWLPMAPLQFEGTLGWKGSAATSAFRPASPRKNSDNEKNVSVGGNSSEISKQRQDCLDFDLNVAEGEEGLLKQIGESSGLPSGQSSVELSPKRSSRFKLDLNSIGDDGDAQPSDQRMEGPLFPRRNGYWSPSPASSSSSMQPLVRNIDLNDRPFFQTDLVDQGLSKSSSIIEAYKQSKSDAPVISILGAKVEVGTREYIPQTLSFPNGKAIEPAMDLPLSGAGSVLGMGPTLSYNHSTAFGYNGLTSVPALSFSPAMYGSPGGPIPYMVDSRGSPVVPQVGGSSSTALSSYSQPPFIVSITGTQLGLNGVGSSRPNFDLNSGFTIDGGNRDMLTARQFFFPAQGRAMEDHVRTLPQSSSSGVSVKRKEPDGGWDTYPLSYKHQQPPWK* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2195 1071 MobiDBLite consensus disorder prediction 1036 1071 - -
Gso17g2195 1071 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 493 - -
Gso17g2195 1071 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 505 1071 - -
Gso17g2195 1071 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Gso17g2195 1071 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 505 1071 - -
Gso17g2195 1071 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 493 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 782 802 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 619 644 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 379 396 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 704 734 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 260 279 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 147 213 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 161 189 - -
Gso17g2195 1071 ProSiteProfiles TFIIS N-terminal domain profile. 73 154 IPR017923 -
Gso17g2195 1071 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 160 IPR035441 -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 709 734 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 446 464 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 280 306 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 366 396 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 430 465 - -
Gso17g2195 1071 MobiDBLite consensus disorder prediction 260 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2195 Gso-Chr17 41656586 41662790 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso17g2195 Med26 0.0003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2195 - - gmx:102667261 2068.12