Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2175 ATGTCAGCGAAATGCAGCCAAATCCGACACATTGTACGTCTCCGGCAGATGCTGCGGCGGTGGCGCAACAAGGCCCGCATGTCGGCGAACAGAGCACCACCGTCCGATGTGCCAGCGGGACACGTGGCGGTGTGCGTGGGCAGCAACCTCACCAGATTCGTGGTGCGCGCCACGTACTTGAACCACCCCGTCTTCAAGAAGCTCCTCCTCCAAGCAGAGGAAGAGTACGGCTTCACCAACCACGGACCCTTAGCCATCCCCTGCGACGAAACGCTCTTCCGAGACGTTCTCCGGTTCATTTCCCGGTCCGACCCGGCCAAATCGAACCGGTTCTTAAACCTCGAACTCGACGACTTTCAGAGACACTACTGCCACGTCGGCATCAGCAACAACCTCGACTTCTGGCCCGAGTCCAGACCGCTCCTACATGGCCCCACTGACAAAACCATTTGGTAA 456 0.5877 MSAKCSQIRHIVRLRQMLRRWRNKARMSANRAPPSDVPAGHVAVCVGSNLTRFVVRATYLNHPVFKKLLLQAEEEYGFTNHGPLAIPCDETLFRDVLRFISRSDPAKSNRFLNLELDDFQRHYCHVGISNNLDFWPESRPLLHGPTDKTIW* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2175 151 Pfam Auxin responsive protein 13 99 IPR003676 GO:0009733
Gso17g2175 151 PANTHER SMALL AUXIN-UP RNA-RELATED 5 144 - -
Gso17g2175 151 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 144 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2175 Gso-Chr17 41433633 41434860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2175 3 150 Calmodulin-binding Proteins AT4G34750 50.000 6.24e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2175 K14488 - gmx:100782525 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1837 14 50791671 50793025 Gso17g2175 17 41433633 41434860 GST
Gso17g2175 17 41433633 41434860 Gso4g0225 4 2052221 2053040 PCT
Gso17g2175 17 41433633 41434860 Gso6g0204 6 1949440 1950310 PCT
Gso4g0225 4 2052221 2053040 Gso17g2175 17 41433633 41434860 PCT
Gso6g0204 6 1949440 1950310 Gso17g2175 17 41433633 41434860 PCT