Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2174 ATGATGGCTTCCGTTGAAGAAAAGATTAAAACTGGAGGAGTTGGAGGAGGAATGGTTGTTGGGGGTCAAACTCTTGTTGCTGAGATGAAACTGTTGAAAGAAATGCAAGAACATTCTGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCACTACCCCAGGTTGGAAGCCTTGTGTTTTACTTCCCTCAGGGGCATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACATCACAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTTCAGAATGCCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTGCAACCACTGAATTCTGAAAGAGAAGTTTTTCCCATATCTGATTTTGGGCTAAAGCACAGTAAACATCCCAGTGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACGAGCACGCATGGCGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAGCTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATATACCGGGGTCAACCAAAGAGACACCTGCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCACAATTGCGAGTTGGCGTGAGGCGTGTTAATCGTCAGCAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCTCTGGCCAAATACAGAAAATCTGTATTTGGAACTCAGGTCTCAGTTGGAATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTAAGGTGGCCTGGCTCTAAATGGCGCAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGCGATAAACAGAATAGAGTTAGTGTGTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTAAAACGGCCATTACCATCTGGACTTTTGGAAAATGAGTGGGGAACTTTGTTAACAAGACCCTTCATAAGAGTTCCAGAAAATGGAACTATGGAGCTCTCAAACTCAATTCCAAATCTCTACTCAGAACACATGATGAAAATGCTTTTTAAACCCCAGCTGATTAACAATAATGGAGCATTTTTATCCGCCATGCAACAAGAATCTGCTGCTACAAGAGGTCCCTTGCAAGAAATGAAGACCACTCTGGCAGCAGAAAACCAAATGCTGCTTAAAAATCTACATCCTCAATCTATCCCTGACCAACCTAATGCCTTAAACATGCAATCACTGTTGAAAAATGATCAGCCTGAAAAATTTCATCCTCTTGCCAAAATTGATAATCATCTTCCTTCTGGGATAGTTATTGACAAGCCAAAATTAGAATGTGAGGTATTACCTGACCGCGTGATTGACTATCCTTCCATGGAAGGGTGCAACAATGAAAAGGTGGCAGTAAATCCTGTTAACCAGCAAGGCCTAGCAACCCAATTGCCATTCCATAATCAAAACCAGAGTCCACTACTCCCTCAATCCAGTCCATGGCCTATGCAACCTCTGATAGAATCCTCCATGCCCCATCCTCAAATGATTGGTATGGCTCAAGCTGATTCTGCCATGGTAAATGGCCTGTTTCCTCAGCTTGACATTGATGAATGGTTGGCGTATGCTTCTTCCCAACCTTTTGCTGGGCAGAACAGACCAACTGGACCTTTTTCTGACTTGCAAGAACATAACTCACTTCAGCCTCAAGTAGTGAATCCCCCTTTACCTTCAATGAACAATGAAGTATGGGATCATTATGTCAAGAACTTCAAGTTCTTATCTCAAGCAGACCAGCTTACATCCATCTGTCAGCCAGGGATGTATGGCCTCAATGGCGTACCAAGCTCAAATAATTTGAGGGATCTTTCCGCTGAGAGCAATAACCAAAGTGAGATTTGTGTCAATGTTGATGCTAGCAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACGATGAAGGACGGAGAATTTCAGAATCCTCAAGATTGCATGGTTGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACCTCTGCTAGTCTAGCCGAGTCACATGCCTATCCTCTTAGAGACATCCCTGACAACTCCGGTGGCACTTCATCAAGCCATGTTGATTTTGATGAAAGCAGCTTCCTGCAGAATAACTCATGGCAGCAAGTACCTGCACCCATCCGAACCTACACAAAGGTGCAAAAGGCAGGTTCCGTTGGAAGATCAATCGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATCGAATGCATGTTTGGACTCGATGGCCTGCTGAATGACACTAAAGGCTCAGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGTGATGATCCTTGGGAGGAATTTGTAGGCTGTGTCCGCTGCATAAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA 2802 0.4408 MMASVEEKIKTGGVGGGMVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNATLHADKETDEIYAQMTLQPLNSEREVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSGLKRPLPSGLLENEWGTLLTRPFIRVPENGTMELSNSIPNLYSEHMMKMLFKPQLINNNGAFLSAMQQESAATRGPLQEMKTTLAAENQMLLKNLHPQSIPDQPNALNMQSLLKNDQPEKFHPLAKIDNHLPSGIVIDKPKLECEVLPDRVIDYPSMEGCNNEKVAVNPVNQQGLATQLPFHNQNQSPLLPQSSPWPMQPLIESSMPHPQMIGMAQADSAMVNGLFPQLDIDEWLAYASSQPFAGQNRPTGPFSDLQEHNSLQPQVVNPPLPSMNNEVWDHYVKNFKFLSQADQLTSICQPGMYGLNGVPSSNNLRDLSAESNNQSEICVNVDASNSVGTTMVDPSTSSTILDEFCTMKDGEFQNPQDCMVGNLSSSQDVQSQITSASLAESHAYPLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2174 933 SMART B3_2 151 253 IPR003340 GO:0003677
Gso17g2174 933 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Gso17g2174 933 Gene3D - 149 252 IPR015300 -
Gso17g2174 933 ProSiteProfiles PB1 domain profile. 827 911 IPR000270 GO:0005515
Gso17g2174 933 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso17g2174 933 SUPERFAMILY DNA-binding pseudobarrel domain 139 280 IPR015300 -
Gso17g2174 933 SUPERFAMILY CAD & PB1 domains 829 906 - -
Gso17g2174 933 Gene3D - 824 916 - -
Gso17g2174 933 Pfam AUX/IAA family 824 914 IPR033389 -
Gso17g2174 933 PANTHER AUXIN RESPONSE FACTOR 5 32 931 - -
Gso17g2174 933 CDD B3_DNA 150 251 IPR003340 GO:0003677
Gso17g2174 933 Gene3D - 315 387 - -
Gso17g2174 933 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Gso17g2174 933 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 931 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2174 Gso-Chr17 41387759 41393545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2174 24 933 B3 DNA Binding Superfamily AT1G19850 60.129 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso17g2174 AUX_IAA 5.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2174 K14486 - gmx:100813003 1857.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1836 14 50757471 50764596 Gso17g2174 17 41387759 41393545 GST