Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2164 ATGGCAGAAGACATCGGCAAAAGCAACCTCGAATCCTCTGCTGCTGCTTCAACAACCTCCCGAGGTTTCTGGCCTTCCGTCTTACGTTGGATCCCCACTTCCTCCGATCACATCATCAATGCTGAAAAACGCCTTCTTTCTCTTGTCAAGACTCCATATGTTCAAGAACAGGTCAATATAGGTTCCGGTCCACCTGATTCCAAAGTTAGATGGTTCCGTTCATCGAGCAATGAACCACGGTTTATTAACACAGTTACGTTTCACAGTAAGGATGATTCTCCTACGCTGGTGATGGTTCATGGATATGCAGCTTCTCAGGGTTTCTTTTTTCGCAATTTTGATGCCCTTGCCTCCCGTTTCAGAGTGATTGCTATTGATCAACTTGGTTGGGGTGGATCTAGCAGGCCTGACTTTACATGCAGAAGCACTGAAGAAACTGAGGCGTGGTTCGTTGATTCTTTTGAGGAATGGAGAAAGGCCAAAAACCTGAGCAATTTTATACTACTTGGGCATTCTTTTGGTGGTTATGTTGCTTCCAAGTATGCACTTAAGCACCCTGAGCATGTAAAGCACTTGATTCTGGTGGGACCTGCTGGATTTTCATCAGAATCAGAAAGAATTACAAAGTTGTTATCAACATGGAAAGGATCAATCCTGAACCAAATATGGGAATCTAATTTTACACCTCAGAGAATCATCAGAGGTTTAGGTCCTTGGGGTCCTGGTATGGTTCGCAAGTATACAAGTGCCAGGTTTGTTACATATACAACTGGGGAAATGCTGGCAGAATCTGAATCGAGTTTACTGACAGATTATGTTTACCATACTTTAGCAGCCAAAGCCAGTGGCGAGCTGTGCTTAAAATATATATTTTCATTTGGAGCACTCCCGAGGTCACCTCTACTTCACAGTGCATCAGAGTGGAAGGTGCCCACCACCTTCATATATGGTTTTCAGGACTGGATGAATTATGAAGGTGCGCAAGAAGCTCGCAAACAAATGAATGTTCCATGTGAAATCCTTAGGGTTCCCCAGGCCGGGCACTTTGTGTTCATTGACAACCCAAGTGGCTTCCATTCAGCAGTGTTTTATGCCTGTAGAAGGTTTCTTAGGCCTGATCAAGACACTGAATCCCTTCCTGAAGGGCTAACCTCTGCATAG 1161 0.4453 MAEDIGKSNLESSAAASTTSRGFWPSVLRWIPTSSDHIINAEKRLLSLVKTPYVQEQVNIGSGPPDSKVRWFRSSSNEPRFINTVTFHSKDDSPTLVMVHGYAASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCRSTEETEAWFVDSFEEWRKAKNLSNFILLGHSFGGYVASKYALKHPEHVKHLILVGPAGFSSESERITKLLSTWKGSILNQIWESNFTPQRIIRGLGPWGPGMVRKYTSARFVTYTTGEMLAESESSLLTDYVYHTLAAKASGELCLKYIFSFGALPRSPLLHSASEWKVPTTFIYGFQDWMNYEGAQEARKQMNVPCEILRVPQAGHFVFIDNPSGFHSAVFYACRRFLRPDQDTESLPEGLTSA* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2164 386 PANTHER BNAA01G13630D PROTEIN 12 374 - -
Gso17g2164 386 PRINTS Epoxide hydrolase signature 119 134 IPR000639 GO:0003824
Gso17g2164 386 PRINTS Epoxide hydrolase signature 168 181 IPR000639 GO:0003824
Gso17g2164 386 PRINTS Epoxide hydrolase signature 182 195 IPR000639 GO:0003824
Gso17g2164 386 PRINTS Epoxide hydrolase signature 310 326 IPR000639 GO:0003824
Gso17g2164 386 PRINTS Epoxide hydrolase signature 343 365 IPR000639 GO:0003824
Gso17g2164 386 Gene3D alpha/beta hydrolase 50 365 IPR029058 -
Gso17g2164 386 PRINTS Alpha/beta hydrolase fold signature 119 134 IPR000073 -
Gso17g2164 386 PRINTS Alpha/beta hydrolase fold signature 168 181 IPR000073 -
Gso17g2164 386 PRINTS Alpha/beta hydrolase fold signature 182 195 IPR000073 -
Gso17g2164 386 PANTHER RE40534P-RELATED 12 374 - -
Gso17g2164 386 Pfam alpha/beta hydrolase fold 94 215 IPR000073 -
Gso17g2164 386 SUPERFAMILY alpha/beta-Hydrolases 84 362 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2164 Gso-Chr17 41293467 41296703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2164 74 201 Acyl Lipid Metabolism Gene Families AT1G64670 32.090 1.91e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2164 - - gmx:100808362 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1828 14 50673516 50677114 Gso17g2164 17 41293467 41296703 GST
Gso17g2164 17 41293467 41296703 Gso4g0235 4 2143775 2148108 PCT
Gso4g0235 4 2143775 2148108 Gso17g2164 17 41293467 41296703 PCT