Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2161 ATGGATGGCTCATTTATCATAGTAGTGCTTCCTCCTTTACCATTTGACCATATTTATCCATCTCAATCACTTCCCACTTTTTATGAGCATTGGCCAACCCCCACGCTTCCTTTATTCTCCCTCTCAAGCTTCAAGCTACTCACACCAATGAAGATCCAGTGCGACGTTTGCAACAAACACGAGGCCTCCGTCTTCTGCACCGCCGATGAAGCCGCCCTCTGCGACGGCTGCGACCACCGTGTCCACCATGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCTCCTAAACAACACCCTCTCTGCGATATTTGCCAGGAGAGAAGAGCCTTTACATTCTGTCAGCAAGACAGAGCGATTCTCTGCAAAGAGTGTGACGTGTCAATTCACTCTGCCAACGAACACACCCTTAAGCACGATAGGTTCCTTCTCACCGGTGTTAAACTTTCTGCTTCTGCTATGCTTCGTTCGTCAGAAACTACCTCTGATTCAAACTCAAACCCTTCTCTTCTTAACTTTTCACACCAAACAACATTACTACCTCCATCTTCCACCACCACCACCACCACCAGCAACAACAACAACAACAAGGTTGCTGTTGAAGGAACTGGTTCAACTAGTGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTTCCTGGGTGGCAAGTTGAAGACTTTCTTGATTCATATTCTGTTCCCTTTGGTTTCTGTAAGAATGATGAAGTGTTGCCACGGTTTGATGGTGAAATGGAGGGGCATCTGAGTTCTTTCTCAACCGAGAACATGGGGATCTGGGTTCCTCAAGCGCCACCAACTCTTATGTGTTCTTCACAAATGGATCGGGTGATAGTTCACGGTGAGACCAATATCAAAGGTAGCAGCAGATCAAGGTTGAAGGATGATAATTTCACTGTTCCACAGATTAGTCCTCCTTCCAATTCCAAGAGAGCCAGATTTCTGTGGTAG 984 0.4675 MDGSFIIVVLPPLPFDHIYPSQSLPTFYEHWPTPTLPLFSLSSFKLLTPMKIQCDVCNKHEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSPKQHPLCDICQERRAFTFCQQDRAILCKECDVSIHSANEHTLKHDRFLLTGVKLSASAMLRSSETTSDSNSNPSLLNFSHQTTLLPPSSTTTTTTSNNNNNKVAVEGTGSTSASSISEYLIETLPGWQVEDFLDSYSVPFGFCKNDEVLPRFDGEMEGHLSSFSTENMGIWVPQAPPTLMCSSQMDRVIVHGETNIKGSSRSRLKDDNFTVPQISPPSNSKRARFLW* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2161 327 MobiDBLite consensus disorder prediction 299 321 - -
Gso17g2161 327 MobiDBLite consensus disorder prediction 163 209 - -
Gso17g2161 327 ProSiteProfiles Zinc finger B-box type profile. 49 96 IPR000315 GO:0008270
Gso17g2161 327 MobiDBLite consensus disorder prediction 305 320 - -
Gso17g2161 327 SMART bboxneu5 102 149 IPR000315 GO:0008270
Gso17g2161 327 SMART bboxneu5 49 96 IPR000315 GO:0008270
Gso17g2161 327 Gene3D Classic Zinc Finger 50 144 - -
Gso17g2161 327 CDD Bbox1_BBX-like 106 149 - -
Gso17g2161 327 CDD Bbox1_BBX-like 54 96 - -
Gso17g2161 327 PANTHER B-BOX ZINC FINGER PROTEIN 22 50 324 - -
Gso17g2161 327 Pfam B-box zinc finger 103 142 IPR000315 GO:0008270
Gso17g2161 327 ProSiteProfiles Zinc finger B-box type profile. 102 149 IPR000315 GO:0008270
Gso17g2161 327 PANTHER B-BOX ZINC FINGER PROTEIN 19 50 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2161 Gso-Chr17 41278153 41280013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2161 50 327 C2C2-CO-like Transcription Factor Family AT1G75540 47.024 3.44e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso17g2161 zf-B_box 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2161 - - gmx:100807827 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1826 14 50657713 50659544 Gso17g2161 17 41278153 41280013 GST
Gso17g2161 17 41278153 41280013 Gso4g0080 4 740055 741756 PCT
Gso17g2161 17 41278153 41280013 Gso6g0071 6 726602 728378 PCT
Gso4g0080 4 740055 741756 Gso17g2161 17 41278153 41280013 PCT
Gso6g0071 6 726602 728378 Gso17g2161 17 41278153 41280013 PCT